Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03899 ATGAATGCAAACGGACATAAATTTGTGAGGTTGGAGGACGGGAAATCAGAGCCATCCTTTAGTATAGAGATAGAAGATTCTATTAACGATGTACATGATAAAAGAAAAGTTAGACCAAGTGTGAGTGCTGTTTTGAAGAGTATAGGAGGAAGGCTGAAGAAGATGAAGAACTGGAGGAGAGCTTCAGCTGTCCTTCCTGTACGTGATAGACATAGAACTGGGAAGAAGATTCTTGATCCACAGGGTCCATTCCTTCAGAAATGGAACAAAATCTTTGCAATAACGTGTGTGATGGCAGTCGCTGTGGACCCGCTCTTCTTTTACATTCCAGTGATTAATGTAGATAAAAAATGCCTTGATTTGAATGGAGCATTGAAGATCACTGTCTGTGTTCTTCGCACCTTCTTTGATCTATTTTACATTCTTCGCATAATCTTCCAGTTTAAGACAGGTTTCATGGCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCGTTGATGATCCTGTGGCTATAATGAAAAGATACTTAACTTCACACTTCTTCATTGATATTCTATCAATTATTCCACTTCCACAGGTGATTGTCTTAGCCATAAATCCAAACCTGAAAACATCGGATTTGTTGAAGTATTCAGTATTAATCCTGTATGTGCCAAGGCTTTGGCGGATCTATCCACTATTCCAAGAAGTAACGAGAACTTCTGGCATATTGACTGAGAAAGCATGGGCTGGAGCTGCCTTTAATCTTTTTCTCTTTATGCTAGCAAGTCATGTGGTTGGAGCTATCTGGTACATGCTTTCGATAGAGTCAGAGGTGCGGTGCTGGCGCAGAGAGTTGAAGAATGCTTCACTCTTTCATCAAGAATACTTGAGTTGTGGACACCGCCATCAAAATGTCTTTCTACTTCTCAATAAAACATGCTCATTCGTTGACCCTGATAAAATTACAGACAAAAACACCTTCAATTTTGGAATATTTTTTGATGCTCTAGATTCAGGTGTGGTAGAATCAACAACAGATCTTTATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAACCTCAACACAAGTACTTATGTCATAGAGATAGCCTTTGCAATCTTCATTGCCATTTTTGGATTGGTTTTATTCTCATTACTTATCGGAAACATGCAGAAATATCTGCAATATATGCAATCTACAAACTTTATAGAGGAAAAAATGCGAGTGAAGAGACATGACATAGAACTTTGGATGTCCCACCGAATGCTACCTGAGTTCTTAAAGGAAAGAATTAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGATGAGGAGGCATTAATTCATAGCCTTCCTAAAGATCTCAGAATGGACGTAAAGCGTCACCTTTGCTTAGCTTTAGTTAGAAGGGTACCTGTGTTTGAGATAATGGATGTGCAGTTGTTGAATGCAATGTGCGAAAGACTGAAGCCAGTCCTTTATGCTGAGAATAGCTACATTTTTCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTTCTACCATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCATGTTCCTCATGGCTGGTGACTTCTGTGGAGAAGAGCTTCTGACATGGGCCTTGGATCCCAATTCCTCCTCAAATCTGCCCATTTCAACCAGGACAGTAGAAACCATATCAGAAGTTGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGCTTGTTGCTTCCCAATATCGATGTCTTATCAACAGCAAACAGCTCCAACACACTTTCAGGTTCTATTCCCAACAGTGGAGGGCATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTCGATACCGGAAAAAGAAGATTGAGAGGTCATTGCGCGAAGCAGAAGACAAGCTACAACATGCTTTGGCAAATGAGGAAGGGTCTTCTCTAAGCCTTGGTGCAACCATATATGCTTCAAGGTTTGCTGCCAATGCACTGCGAAACTTGAGAGAAAATAGCAGACACAATATATAG 2061 0.4085 MNANGHKFVRLEDGKSEPSFSIEIEDSINDVHDKRKVRPSVSAVLKSIGGRLKKMKNWRRASAVLPVRDRHRTGKKILDPQGPFLQKWNKIFAITCVMAVAVDPLFFYIPVINVDKKCLDLNGALKITVCVLRTFFDLFYILRIIFQFKTGFMAPSSRVFGRGELVDDPVAIMKRYLTSHFFIDILSIIPLPQVIVLAINPNLKTSDLLKYSVLILYVPRLWRIYPLFQEVTRTSGILTEKAWAGAAFNLFLFMLASHVVGAIWYMLSIESEVRCWRRELKNASLFHQEYLSCGHRHQNVFLLLNKTCSFVDPDKITDKNTFNFGIFFDALDSGVVESTTDLYQKFFYCFWWGLRNLSSLGQNLNTSTYVIEIAFAIFIAIFGLVLFSLLIGNMQKYLQYMQSTNFIEEKMRVKRHDIELWMSHRMLPEFLKERIRRYEQYKWQENRGVDEEALIHSLPKDLRMDVKRHLCLALVRRVPVFEIMDVQLLNAMCERLKPVLYAENSYIFREGDPVDEMLFIMRGKVSTMTTNGGRTGFFNSMFLMAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMADDLKLVASQYRCLINSKQLQHTFRFYSQQWRAWAACFIQAAWRRYRKKKIERSLREAEDKLQHALANEEGSSLSLGATIYASRFAANALRNLRENSRHNI 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03899 686 SMART cnmp_10 480 611 IPR000595 -
Pumo5g03899 686 CDD CAP_ED 480 599 IPR000595 -
Pumo5g03899 686 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Pumo5g03899 686 Coils Coil 633 653 - -
Pumo5g03899 686 SUPERFAMILY Voltage-gated potassium channels 79 399 - -
Pumo5g03899 686 Gene3D Jelly Rolls 478 598 IPR014710 -
Pumo5g03899 686 Pfam Ion transport protein 88 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo5g03899 686 Gene3D Helix hairpin bin 398 471 - -
Pumo5g03899 686 SUPERFAMILY cAMP-binding domain-like 409 596 IPR018490 -
Pumo5g03899 686 Gene3D - 91 397 - -
Pumo5g03899 686 ProSiteProfiles cAMP/cGMP binding motif profile. 480 564 IPR000595 -
Pumo5g03899 686 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
Pumo5g03899 686 Pfam Cyclic nucleotide-binding domain 500 592 IPR000595 -
Pumo5g03899 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03899 Pumo-Chr5 89091491 89097066 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03899 1 682 Ion Channels AT5G53130 60.976 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03899 K05391 - gmx:100797784 1066.22