Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03896 ATGAATGCAAAGGGATATAAATTTGTGAGGTTTGAGGACTGGAAATCAGAGTCATCTTTTAGTATAGAGCAAGAAGATTCTATTAACGATGGAAAACACAAAAGAAGACCAAGTGTGAGTGCTGTTTTGAAGAGTATAGGAAGAAGGCTGGAGAGTGGATCAGAGAAGATGAAGAACTTGAGAAGAGCTTCAGCTGTCCATCCTGTAAGCGATGGACAGAAAAAGCTGCCACCTAGGAAGAAAATTCTTGATCCACAGGGTCCAATCCTTCAGCAATGGAACAAAATCTTTGTAATAACGTGTGTAATGGCAGTCTATGTGGACCCGCTCTTCTTTTACATTCCAGTGATTGATGATGATAGAAAATGCCTTGATTTGGATGGAGCATTGCAGATCACTGCCAGTGTTCTTCGCACCTTCTTTGATCTATTCTACATTCTTCGCATAATCTTTCAGTTTAAGACAGGGTTCATTGCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCATTGATGATCCTGTGGCTATAATGAAAAGATACTTAACTTCACACTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGGTGATTGTTTTAGCCATTAATCCAAACCTGAGAACATCAGATACATTTGTAGCAAAGAATTTGTTGAAGTACTCAGTATTATTCCAGTATGTGCCAAGGCTTTGGCGGATTTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCAGCTTTTAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTAACTGGTATATGCTTTCGATAGAGTCAGAGCTGCGGTGCTGGCGCAGAGAGTTAAAGAATGTTTCACTGAGTTGTGGAGACCGCGGTCGAAATGTCTTTACACTTCTCGATCAAAATTGTTCTTTGGTTGACCCTGATAAAATCACAGACCCAAACACCTTCAATTTTGGAATATATTTTGATGCTCTAGATTCACGTGTGGTAGAATCAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAATCTCAAGACTAGTACTTATGTCTCAGAAATAGCCTTTGCAATCTTCATCTCCATCTTTGGATTGGTCTTATTCTCGTTACTTATTGGAAACATGCAGAAATATCTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCATCGTATGCTACCTGAAAACTTGAAGGAAAGAATTAGAAAGTATGAACAGTACCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTTCCAAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGCTTAGCTTTAGTTAAAAAAGTGCCAATGTTCGAAAAAATGGACGAGCAGTTGTTGGATGCAATGTGCCATAGACTGAAGCCAGTCCTTTATACTGAGAAGAGCCACATTGTTCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTTCTACCATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACACCATGTTCCTCATGGCTGGTGACTTCTGTGGAGAAGAGCTTCTGACATGGGCTTTGGATCCCAACTCCTCCCCAAATCTACCCATTTCAACTAGGACAGTAGAAACCATATCAGAAGTTGAAGCCTTTGCACTCATGGCTGATGACTTGAAGTTGGTTGCTTCCCAATTTCGACGTCTTCACAGCAAACAGCTCCAACATGCTTTCAGGTTCTATTCCTCACAGTGGAAGACATGGGCTACCTGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGATTGAGAGGTCATTGCGCGAAGCCGAAGACAAGCTACAAGATGCTTTAGCAAATGAGGAAGGGTCTACTCTAAGCCTTGGTGCAACCATGTATGCTTCAAGGTTTGCTGCCAATGCACTGCGAAACTTGAGAGAAAATAGCAGACACAATAGAATGCAACAGAGACTACTACCTCTGTTACCTCAAAAGCCAGCTGAGCCAGATTTCACTGCTCAGAAACACTAA 2130 0.4155 MNAKGYKFVRFEDWKSESSFSIEQEDSINDGKHKRRPSVSAVLKSIGRRLESGSEKMKNLRRASAVHPVSDGQKKLPPRKKILDPQGPILQQWNKIFVITCVMAVYVDPLFFYIPVIDDDRKCLDLDGALQITASVLRTFFDLFYILRIIFQFKTGFIAPSSRVFGRGELIDDPVAIMKRYLTSHFIIDILSIIPLPQVIVLAINPNLRTSDTFVAKNLLKYSVLFQYVPRLWRIYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGANWYMLSIESELRCWRRELKNVSLSCGDRGRNVFTLLDQNCSLVDPDKITDPNTFNFGIYFDALDSRVVESTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVSEIAFAIFISIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKERIRKYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAMCHRLKPVLYTEKSHIVREGDPVDEMLFIMRGKVSTMTTNGGRTGFFNTMFLMAGDFCGEELLTWALDPNSSPNLPISTRTVETISEVEAFALMADDLKLVASQFRRLHSKQLQHAFRFYSSQWKTWATCFIQAAWRRYWKKKIERSLREAEDKLQDALANEEGSTLSLGATMYASRFAANALRNLRENSRHNRMQQRLLPLLPQKPAEPDFTAQKH 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03896 709 FunFam Cyclic nucleotide-gated ion channel 1 408 472 - -
Pumo5g03896 709 Gene3D Jelly Rolls 479 599 IPR014710 -
Pumo5g03896 709 ProSiteProfiles cAMP/cGMP binding motif profile. 481 564 IPR000595 -
Pumo5g03896 709 Gene3D Helix hairpin bin 408 472 - -
Pumo5g03896 709 Coils Coil 633 653 - -
Pumo5g03896 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 704 - -
Pumo5g03896 709 MobiDBLite consensus disorder prediction 690 709 - -
Pumo5g03896 709 MobiDBLite consensus disorder prediction 18 37 - -
Pumo5g03896 709 FunFam Cyclic nucleotide-gated ion channel 1 479 597 - -
Pumo5g03896 709 MobiDBLite consensus disorder prediction 18 39 - -
Pumo5g03896 709 SUPERFAMILY Voltage-gated potassium channels 84 403 - -
Pumo5g03896 709 Gene3D - 95 405 - -
Pumo5g03896 709 Pfam Cyclic nucleotide-binding domain 502 591 IPR000595 -
Pumo5g03896 709 SUPERFAMILY cAMP-binding domain-like 410 606 IPR018490 -
Pumo5g03896 709 SMART cnmp_10 481 612 IPR000595 -
Pumo5g03896 709 CDD CAP_ED 481 612 IPR000595 -
Pumo5g03896 709 Pfam Ion transport protein 92 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03896 Pumo-Chr5 89053081 89058637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03896 1 706 Ion Channels AT5G53130 65.331 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03896 K05391 - gmx:100797784 1268.83