Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03890 ATGGAAGAGAGCAGCAGCAAGAGGAAACACACTAGTCTGATCCATGAACTAATCCAAGGAAAGGACCTAGCAAAGCAGCTCGGTAACCATCTGGTTTCATCTTCTCCATCATTTCATGAAACCAATGAATTGTTGGTTGAGAAAATACTTTTGTCCTATGAGAAAGCACTCACCATACTGAACTGGGGGTCTATTAATGTGGGAGAGGCCAAAACCAACAGTGGCAGCATCATGGATTCCCATTGTTCTTTTACAAATGGTGGGAGCCCCAGAAGTGAGGTCGTGGACCGTGAATTTGAGCACAAAGCTGTCTTCAAGAAAAGAAAGACCATGCCCAGATGGACGGAGCAAGTGAAGGTTTGCTCAGGAACAGGACTTGAGGGGTCTTTGGATGATGGATATAGCTGGAGAAAATATGGGCAAAAGGATATTCTCGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGACATGTACAAGGGTGTCTGGCAACAAAACAAGTTCAAAGGTCAGATGAAGACCCAACAACAATTGAGGTGACCTACAGAGGAAGACATACATGCACGCAAGCTAAGCATTTAAACAAGGCATTCCCATCAAACATAAAGACGGGTTTGGGGGGAAATCAATTCCACAATGATCAAAAGAATCAACCACTTCAAGAGAAAATACAACAACAAACCCCAGAGGGGATTTTCACCTTTGAAACAGAGTTTAAAGTCAAAACTGAGGAATTGGAAACCAAGGAGGATATCTTCCAATGGTTTTCCTTTCCTTCTCCATCAACTGGATCAGAAAATGAGGATAACAACATGTTACCCGAGACCATGATTGAAAACCATTTCATGGAAAGCTTTTCTCCTGTATTCATATCACCAGCGACTTCAGAATCAAACCCTTTCTGTTTGTCAGCGTACCACTTGGACAGCATTGGACCATTATACCAAAACATACAAACCTCAGAATCTGATATCACTGAGATAGTTTCAGCTCCAACTTCAGTCACCAACTCCCCAATCCTGGATTTGGACATTTTGCTTGATAAAGGGGATTTTGACACGGATTTCCCTTTCAACACCCCTGAATTTTTCTATTCATAA 1107 0.421 MEESSSKRKHTSLIHELIQGKDLAKQLGNHLVSSSPSFHETNELLVEKILLSYEKALTILNWGSINVGEAKTNSGSIMDSHCSFTNGGSPRSEVVDREFEHKAVFKKRKTMPRWTEQVKVCSGTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRHVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKHLNKAFPSNIKTGLGGNQFHNDQKNQPLQEKIQQQTPEGIFTFETEFKVKTEELETKEDIFQWFSFPSPSTGSENEDNNMLPETMIENHFMESFSPVFISPATSESNPFCLSAYHLDSIGPLYQNIQTSESDITEIVSAPTSVTNSPILDLDILLDKGDFDTDFPFNTPEFFYS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03890 368 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 311 IPR044810 GO:0003700
Pumo5g03890 368 SMART WRKY_cls 130 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03890 368 ProSiteProfiles WRKY domain profile. 125 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g03890 368 Gene3D WRKY domain 118 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03890 368 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g03890 368 FunFam WRKY transcription factor 53 116 193 - -
Pumo5g03890 368 Pfam WRKY DNA -binding domain 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03890 Pumo-Chr5 88960349 88962287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03890 17 201 WRKY Transcription Factor Family AT5G24110 48.649 2.22e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g03890 WRKY 8.7e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03890 - - gmx:100790050 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03890 5 88960349 88962287 Pumo7g00676 7 11149197 11152498 PCT