Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03874 ATGGAAGCTAGAATCAGTGAGCAAAAAGTTGTCACTTACAAGCATGTCAAACCTGGCATTTTGAATGCAGCACCAAAGGTTGTTCGGATTTCAATGATGGATCCCTATGCCACAGATGATGAAGATGAAGATGAAGGGTTGGTTAATCATCCTAGAATGAAGAAGATTGTGAGTGAGATCAGAATTGTGGAGAAGAAGCCTTCAGCTAGTGTGTCACTGAAACAGCCTTTCGAGGGAAAAACTGAAGAGGGTCTTGGAAAAAAGAAGCTTAGAGGAGTTCGTCAAAGGCAATGGGGAAGATGGGCTGCAGAAATCAGAGATCCTGTGAAGCGATCAAGAGTGTGGCTAGGGACTTATGACACTGCTGAAGAAGCTGCTATGGTTTATGACAAAGCAGCTATTACCTTAAGAGGCTCTAATGCTCTCACTAATTTCATCAAGCCTCCTACAAGGGAAGATATGGACATTGTTCTTTCTGATTATGGCCCTGATGAAACTGAAGCTACTGTGAGTGGTGATAATGATTCAAGTAAAGAGTCTCATTTGCCTTCACCTACTTCTGTGCTTGGACCTCAACCTGTGGAACTTATTTTGGAGGATGTTTATGAAGCAGATGGTTTGATCAAAGAAGAGCCAAGTTCTCAAGACAGTTTCTTGTTTTTAGATTCACATTCACCGTCCATTGATTGTTATTTCAACTTTGAAACTCCTCCACCAATGTTTCTTGATAAAACTAGTGTAACACAGCCTGTTTTCCATGACAGCTTCAGTGATACTTCCCATCTTGTCAATGAGGATTTTCAATCATGGAATTGGGATATAGATAGTTACTTCAGTGATCCTTTTTCGCATTGA 855 0.4082 MEARISEQKVVTYKHVKPGILNAAPKVVRISMMDPYATDDEDEDEGLVNHPRMKKIVSEIRIVEKKPSASVSLKQPFEGKTEEGLGKKKLRGVRQRQWGRWAAEIRDPVKRSRVWLGTYDTAEEAAMVYDKAAITLRGSNALTNFIKPPTREDMDIVLSDYGPDETEATVSGDNDSSKESHLPSPTSVLGPQPVELILEDVYEADGLIKEEPSSQDSFLFLDSHSPSIDCYFNFETPPPMFLDKTSVTQPVFHDSFSDTSHLVNEDFQSWNWDIDSYFSDPFSH 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03874 284 Gene3D AP2/ERF domain 88 147 IPR036955 GO:0003700|GO:0006355
Pumo5g03874 284 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Pumo5g03874 284 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Pumo5g03874 284 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Pumo5g03874 284 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 190 - -
Pumo5g03874 284 FunFam Ethylene-responsive transcription factor 2 88 147 - -
Pumo5g03874 284 MobiDBLite consensus disorder prediction 169 187 - -
Pumo5g03874 284 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Pumo5g03874 284 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Pumo5g03874 284 MobiDBLite consensus disorder prediction 162 190 - -
Pumo5g03874 284 CDD AP2 88 145 IPR001471 GO:0003700|GO:0006355
Pumo5g03874 284 SUPERFAMILY DNA-binding domain 89 145 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03874 Pumo-Chr5 88784616 88785470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03874 4 274 AP2-EREBP Transcription Factor Family AT3G61630 35.144 2.47e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g03874 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03874 - - gmx:100814120 421.394