Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03854 ATGAACTCAGGAGGACAAGTGTTCATTTCCCAAGATCAATCGCAGAGTTGCAGCCAGTCATTTCACCCGCAGCAAGGGATGTCACTTAATTCATGTGGCTTCCAGAGCTTGTACCTAGGCAGTTCCAAATGCTCCAACTTGGTTTTGCAGGATGTTAGGAAAGTGCCACAGTACCAAGACGTATTGGACAAATGCTCCCACTTCGACCACCCATTTGATGAATCCTGTGCGGATTGCACCGATGCAATATCGAGCGTGAGAGATAGTTTATCTATTCAAGTGGCCAACAACAACAACCACACTGAGCTAGTCATATGTGGGGTAGCAGCTATTGTTGCTGTTGCAGCTGGCAAACCAGACGATCCTCTCGTTGACAAAATCTTACGCTGCTTGCCACCAGCAACAGACAAGAGATCTTCGTGGAAACCCTTGTTGAGTGTGCCAGTAGTTATCCTTGCAATGTTCCTTGTGGTTGTTATGATCAAATGTTTGTCCAAGAAGAAGCGTCGTAGACAGGCTAACTTGAAGGAGATCGCTGCGTGGTCTGGATTGTACTGGTTCTGCAAAAGAGAAATTGATAATGCCATGAATTATGGTGGTGAAAAGATAAGCCTTGGACGTGGGAGTGCAGGACAGGTGTATAGAGGCGTTCTGCCAAGTGGTCAACTCGTGGCCATCAAGCATTTAACAAAGAGCAACACCTCTGAGTCTTTCACTCGAGAAGTTGAAGGCCTTTCCAGGCTTCGCCATCCAAACCTGGTTTGCCTCTTTGGAAGTTGCATAGAAGGGGATGAGAGGTATTTAGTCTATGAATTTTGTGCAAACGGGAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACAAGAGTAAGGATTTTGAGAGATTGTTCATATGCACTTAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGACTGAGAAATACCAAGCCAAACTGTCAGATTTTGGACTATCAAAGGTGATGGGGATTAAGGAGAGCAAGGTTTTTACTGATGTTAGAGGAACCATAGGCTACATGGATCCAGAATACATGAGTAATGCCAAGCTCACCTGCGCCAGTGATGTATACAGTTTTGGTATTGTTGCTCTACAAATTCTGTCTGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGCATGGGAAAGCGTCCACTGTCTGATTTTGAAGATCCGCGACTAAATGGAAAAGTTGATAAGGCAGACTTCGAAGCCATCCTTCAGATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGGTTGTTTTTGAGGAATTGGACAAGGTCTGCAGGGACACAGAAACACGGATGAAGCAAAAGAAGGATGAGAGCTCATCAACAACATCCACCCCCAGCTCCAAATCCTCCAAATCGGCTCCTCTATGA 1503 0.4484 MNSGGQVFISQDQSQSCSQSFHPQQGMSLNSCGFQSLYLGSSKCSNLVLQDVRKVPQYQDVLDKCSHFDHPFDESCADCTDAISSVRDSLSIQVANNNNHTELVICGVAAIVAVAAGKPDDPLVDKILRCLPPATDKRSSWKPLLSVPVVILAMFLVVVMIKCLSKKKRRRQANLKEIAAWSGLYWFCKREIDNAMNYGGEKISLGRGSAGQVYRGVLPSGQLVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGSCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSYALKYLHHHIEGCVVHRDIKLTNILLTEKYQAKLSDFGLSKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKVDKADFEAILQIAVLCVAKSSKGRPTIEVVFEELDKVCRDTETRMKQKKDESSSTTSTPSSKSSKSAPL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03854 500 SUPERFAMILY Protein kinase-like (PK-like) 200 465 IPR011009 -
Pumo5g03854 500 Gene3D Transferase(Phosphotransferase) domain 1 273 494 - -
Pumo5g03854 500 Pfam Protein kinase domain 204 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03854 500 SMART serkin_6 199 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03854 500 Gene3D Phosphorylase Kinase; domain 1 158 272 - -
Pumo5g03854 500 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 84 493 - -
Pumo5g03854 500 FunFam probable receptor-like protein kinase At5g59700 273 484 - -
Pumo5g03854 500 Pfam SPARK 3 100 IPR043891 -
Pumo5g03854 500 Coils Coil 462 482 - -
Pumo5g03854 500 MobiDBLite consensus disorder prediction 483 500 - -
Pumo5g03854 500 MobiDBLite consensus disorder prediction 472 500 - -
Pumo5g03854 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Pumo5g03854 500 ProSiteProfiles Protein kinase domain profile. 199 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03854 Pumo-Chr5 88579338 88582129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03854 205 484 Receptor kinase-like Gene Family AT1G51800 41.724 7.00e-58 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Pumo5g03854 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03854 - - gmx:100790391 877.085