Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03849 ATGGCGAAGAGGGAGCGAGTGAGAGGAGTGTCGGCATCGGAATTGAAGGAGAAGTTGCGCGAATTGGTGAAGACCATCGTGGACTCCGACGACTACACGGTGCAAGCCGCCGACGAAGCCATCGCCACCCTTTCTGCTCTCAAACATTTAAAGTCTTTCGACGACTTTCCTCTTCCTCCCGAATTTCGCTGCCCCATTTCAACCCAATTGATGACCGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTTATTCAGAGGTGGTTGAATGAGGGTCACAGAACATGTCCTCAGACACAGCAGGTTCTGTCTCACACAATTCTAACTCCTAATTACTTGGTCCGAGACATGATTCTGCAGTGGTGTAGGGACCGTGGAGTTGACCTACCTAAGCCTGTTAAGGACATTGATGAAGTGGTCACCAATGCCGATAGAAACCATTTGAATTCGTTGCTTCACAAGTTGTCCTTGTCCGTTTCTGATCAGAAAGAAGCTGCCAAGGAGCTTCGGCTTTTGACAAAGCGAATGCCTTCCATTCGAACACTTGTTGTGGAGTCCAGTGATGTGATTCCCCAGTTGCTGAGTCCGTTATCGTCGCCGGGTGCGGCTTCTACTGACCCTGATCTCCACGAGGACTTGATCACCACGGTTCTGAATCTCTCAATACATGATGATAATAAGAAGGTGTTTGCAGAGGATCCTGCAGTTATTTCTCTGCTTATTGATGCCTTGAAATCTGGAACAATTCAAACAAGGAGCAATGCTGCGGCTGCTATTTTCACTTTGTCGGCACTTGATTCCAACAAGCACATCATTGGGAAATCTGGGGCTATCAAGCATTTGCTTGAGCTTTTGGATGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCAGCCATATTTAACCTTTGTCTTGTGCACGAGAATAAGGGGAGGACCGTGCGAGATGGGGCGGTTCGGGTTATTCTGAACAAGATGATGGACTACATACTAGTTGATGAGTTGTTGGCTATATTGGCACTTCTCTCCAGCCATCCCAAGGCTGTTGAAGAAATGGGTGATTTAGGTGCTGTTCCTTTGTTATTGGGGATTATTAGGGAGAGCACATCTGAGAGGAGCAAGGAAAATTGTGTTGCAATCCTATACACAATCTGTTTTAGTGATAGAACAAAGTTGAAGGACATTAGAGAAGAGGAAAAGGCCAATGGTACACTGTCAAAGCTTGCACTGTATGGAACTTCAAGGGCTAAACGGAAGGCTAACTGTATTCTTGAGAGGCTTAATAGATCCCCCTCCTTAACTCACACTGCTTAG 1323 0.4671 MAKRERVRGVSASELKEKLRELVKTIVDSDDYTVQAADEAIATLSALKHLKSFDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHTILTPNYLVRDMILQWCRDRGVDLPKPVKDIDEVVTNADRNHLNSLLHKLSLSVSDQKEAAKELRLLTKRMPSIRTLVVESSDVIPQLLSPLSSPGAASTDPDLHEDLITTVLNLSIHDDNKKVFAEDPAVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLELLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDYILVDELLAILALLSSHPKAVEEMGDLGAVPLLLGIIRESTSERSKENCVAILYTICFSDRTKLKDIREEEKANGTLSKLALYGTSRAKRKANCILERLNRSPSLTHTA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03849 440 FunFam RING-type E3 ubiquitin transferase 188 332 - -
Pumo5g03849 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Pumo5g03849 440 ProSiteProfiles U-box domain profile. 57 131 IPR003613 GO:0004842|GO:0016567
Pumo5g03849 440 PANTHER U BOX DOMAIN-CONTAINING 20 430 - -
Pumo5g03849 440 SMART Ubox_2 61 124 IPR003613 GO:0004842|GO:0016567
Pumo5g03849 440 SUPERFAMILY ARM repeat 157 430 IPR016024 -
Pumo5g03849 440 FunFam RING-type E3 ubiquitin transferase 335 436 - -
Pumo5g03849 440 SUPERFAMILY RING/U-box 54 135 - -
Pumo5g03849 440 FunFam RING-type E3 ubiquitin transferase 57 131 - -
Pumo5g03849 440 Gene3D - 192 332 IPR011989 -
Pumo5g03849 440 SMART arm_5 348 389 IPR000225 GO:0005515
Pumo5g03849 440 SMART arm_5 226 267 IPR000225 GO:0005515
Pumo5g03849 440 SMART arm_5 178 225 IPR000225 GO:0005515
Pumo5g03849 440 SMART arm_5 268 308 IPR000225 GO:0005515
Pumo5g03849 440 Pfam U-box domain 59 127 IPR003613 GO:0004842|GO:0016567
Pumo5g03849 440 CDD RING-Ubox_PUB 59 111 IPR045210 -
Pumo5g03849 440 Gene3D - 333 434 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03849 Pumo-Chr5 88514519 88516240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03849 120 440 U-box Gene Family AT3G07360 58.537 5.77e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03849 - - gmx:100806619 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03849 5 88514519 88516240 Pumo5g03849 5 88514519 88516240 ECH