Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03838 ATGTTCAAGCTATCTCGCGTGCTTCCTCTCACTTCCACTTCCAGGCATAGGCTGTTGGAAGTGTTGTCGTCTAGGAAAGTTGAAGTTGGAGACCGTCTGTGGGATGGGCGCAATTTTACCTATTCAGCTGGCATTTCTACTGCTACAAATAACTATGCTGCCAAAGGATATGCTTCGGATCGAATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCTGCATTCTCGTTGATTCCTTGTCTTCCGACTTTCACTAAGTTGGATTCTGGGACTGTTGTAGTTGATCGACGTGGTTCAATCATGATGACTTTCATGCATTCTGTTGGAGAGCGCAAGTATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCGGCAACTGAAGTTGGTTCTTTGATAACCATGGGCACTCAAGATTCCTGTGATTTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATGCAAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGCGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCACTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCAGCAATCCAGAGGCACAGTTGGCCTTCAACCAAAGGGTGTCTCTAAAGATTTAGACTTGGAATGGGAAAAATGA 726 0.4353 MFKLSRVLPLTSTSRHRLLEVLSSRKVEVGDRLWDGRNFTYSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLIPCLPTFTKLDSGTVVVDRRGSIMMTFMHSVGERKYDWEKRQRFALSATEVGSLITMGTQDSCDFFHDPSMLSSNAGQVRKSLSIKPHANGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTACTFALPHIMGWDQITNQQSRGTVGLQPKGVSKDLDLEWEK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03838 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 59 220 IPR009044 GO:0003677|GO:0006355
Pumo5g03838 241 Gene3D Transcriptional Coactivator Pc4; Chain A 52 222 IPR009044 GO:0003677|GO:0006355
Pumo5g03838 241 Pfam Whirly transcription factor 68 200 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pumo5g03838 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 42 241 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03838 Pumo-Chr5 88324753 88327885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03838 37 241 Whirly Transcription Factor Family AT1G71260 59.813 2.06e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pumo5g03838 Whirly 9e-52 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03838 K26561 - gmx:100527314 435.647