Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03835 ATGACAACCAACTCACCTCCTTCTTCCACCACCACCAACACCACCAGCAACAGCACCACCAGCCCCCCGCCGCCGCCGCCGCCGCCGCACACCACCGCGTCGCCGACCAACGGCCTCTTGCCCAACGCCGATGGGTCCCACATACTCTACCCTCACTCGGTGGCGTCCGCGGTGTCGTCGCAGCTTGAACCGGCGAAGCGGAAGCGCGGGCGGCCGAGGAAGTACGGGACGCCGGAGCAAGCTCTGGCCGCGAAGAAAGCCGCTACGACGTCGTCTCAGTCGTTCTCTGCGGACAAGAAGCTCCACTCCCCAACGTTTCCTTCTTCCTCTTCTTTCACTTCCAAAAAATCTCATTCCTTCGCGCTAGGCAATGCAGGCCAAGGGTTCACTCCGCATGTCATTTCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGTATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACGTATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTTGGAACTCGAACTGGTGGTCTCAGTGTATGCTTATCTAATACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCACTTAAAGCAGCTGGTCCAGTTCAGGTCATTGTTGGAACATTCTTTATTGACAACAAGAAGGATACTGGTGCTGGTGTAAAAGGTGATGCCTCTGCTAGCAAGTTGCCATCTCCAGTTGGTGAACCAGTATCAAGTCTAGGTTTCCGCCAATCAGTTGACTCTTCCAGTGGTAATCCAATCCGCGGAAATGAAGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCACGGGACACCTCCCCGGTCCACAGACTGGGGTCGTCCGGATTCAAGAAATACCGGTTTTGAGTTGACAGGTTTCCTATCTGCAGGAAGGACAGGTCATGGGGCGCACCAATCTCCTGAGAATGGGGGCTATGAGCAAATTCCCGATTGA 1074 0.5279 MTTNSPPSSTTTNTTSNSTTSPPPPPPPPHTTASPTNGLLPNADGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTSSQSFSADKKLHSPTFPSSSSFTSKKSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDTGAGVKGDASASKLPSPVGEPVSSLGFRQSVDSSSGNPIRGNEEHQAMGGSHFMIQQLGLHGTPPRSTDWGRPDSRNTGFELTGFLSAGRTGHGAHQSPENGGYEQIPD 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03835 357 MobiDBLite consensus disorder prediction 253 293 - -
Pumo5g03835 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 241 - -
Pumo5g03835 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 271 IPR039605 GO:0003680
Pumo5g03835 357 MobiDBLite consensus disorder prediction 84 112 - -
Pumo5g03835 357 MobiDBLite consensus disorder prediction 19 34 - -
Pumo5g03835 357 ProSiteProfiles PPC domain profile profile. 125 266 IPR005175 -
Pumo5g03835 357 MobiDBLite consensus disorder prediction 274 289 - -
Pumo5g03835 357 CDD DUF296 130 241 IPR005175 -
Pumo5g03835 357 Gene3D - 131 254 - -
Pumo5g03835 357 MobiDBLite consensus disorder prediction 309 357 - -
Pumo5g03835 357 MobiDBLite consensus disorder prediction 1 112 - -
Pumo5g03835 357 MobiDBLite consensus disorder prediction 318 332 - -
Pumo5g03835 357 MobiDBLite consensus disorder prediction 1 18 - -
Pumo5g03835 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 241 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03835 Pumo-Chr5 88295788 88304029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03835 44 357 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 53.433 1.07e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03835 - - gmx:100816781 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03835 5 88295788 88304029 Pumo5g03835 5 88295788 88304029 ECH