Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03834 ATGGAAAGACGGTTACTTCTTTTGTTGTTCTTGCTGTTGGTTATGGTGCTTTCTGTTTGTGCCATCGATGTGGAATATTCACAGTGCAATTGTGATGAGGAAGGGCTTTGGAGCATCCAGAACGTGCTGGTTTGCCAGAAAGTGAGTGACTTTTTCATTGCCATTGCATATTTTTCCATTCCCCTTGAGCTCCTTTACTTTGTGAGTTGCTCCAGTGTCCCCTTTAAATTGGTATTCCTTCAATTCATTGCCTTCATAGTTCTCTGTGGATTGACCCATTTGCTCAATGCCTATACTTACTATGGCCCCCACTCCTTCCAGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTTTCTTGTGCCACTGCCATTTCTTTTCCCACACTCATTCCTCTTCTGCTGAAAATCAAAGTGAGGGAGCTATTTTTGAGGCAGAATGTGTTGGAATTGGGCCAAGAGGTTGGGATGATGAAGAAACAGAAGGAAGCTAGTTGGCATGTTAGGATGCTCACTTGTGAGATTAGGAAATCTCTGGATAAGCATACCATCTTGTATACCACACTTGTTGAGCTTTCCAAGGCATTGGATTTGCACAATTGTGCAGTATGGATGCCTGATGAGGATAGGAGAGAAATGCATTTGACTCATGAGTTGAAACCAAGCTCAACAAGGAGTTTTCACATTTCTATTCCTATCAGTGATCCTGATGTGTTGGACATAAAGAAGAGCAAAGGGGTGTGGATTTTGAGGCCTGATTCTTCACTTGGAGCTGCAAGTAGTGGCTGTGGATCTGGGGATTCTGGTGCTGTTGCAGCCATTCGCATGCCAATACTTCATGTATCCAATTTTAAAGGAGGGACACCAGAGTTTGTTGAAACATCTTATGGTGTATTGGTTTTGGTTCTTCCAAATTCAAACTCAAGGGTTTGGACCTCCCATGAAATGGAGATAGTGGAAGTGGTTGCTGACCAGGTGGCTGTGGCATTGTCTCATGCGTCTGTTCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGGCGTTGCAACAGGCTCAAAAGAACGCAATGATGGCCAGGAAGGCAAGGAGCTCGTTTGAGAAAGTTATGAGTCATGGCATGCGGAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATAATAATGTAAGACCTGAACAGAAGATTGTTATTGACTCAATTTTGAAAGTTAGCAATGCACTCTCGCGATTGATTAATGATGTGATGGAGATTGCGGCAAATGACAATGGAAGCTTCCGGTTAGAGATGAAACCTTTCCGTCTACATTCAATGATGAGGGAAGCTTCTTGCACTGCCAAGTGTTTGTGTATATATAAAGGCTTTGGTCTTGAAGTTGATGTTGACAAGTCTTTGCCTGATCTGGTCATAGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACATATATGATAAAGGGACTCTCATTTTTCAAGTTTATCTTGAAAGTGATAGTGGAGATAAAGATGATAGAAGTTTTGGAATATGGAGATCAAGCATACAAAATGAGTTTGTACATATAAAATTTAATTTTCAGATAAATGGTATTAATTTCCAGTCAGATGAATCAGTCCCAACAAGAAATTATACTGGTAGAAGGCACTACAACAATGAACCTAAGGAAGGCCTGAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCAAGGTAATATTTGGATATCAACCAACTCTCTGGGTTTGGCACAAGGAATGACACTTCTTCTCAAGTTTCAGCTAGGATCATCTCATGGAAGATTGATTCTTGCTCCTAAAGATTTTTCAACCTCTCAGTTTAGAGGGCTTAATGTTGTGTTAGCAGATGATGATGATGTAAACAGGACTGTGACCAAGAAGCTGCTCGAGAAACTGGGGTGTCAAGTAACTGCTGTTTCATCAGGATTTGAATGTCTTGGTGCTATAAGTGCCTCTGGTAACTCATTCAAAATTATTCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAATTCCAAAGCCATAATTGGCCCTTGATCATAGCTTTTACTGCAAGTGCAGAAGAACACATCAAGGAGAGATGTCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCATGAGATAGCAGATGAACTTAGAACAGTCCTGCAACGTGCAGGTGAAAAATTGTGA 2286 0.4143 MERRLLLLLFLLLVMVLSVCAIDVEYSQCNCDEEGLWSIQNVLVCQKVSDFFIAIAYFSIPLELLYFVSCSSVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDEDRREMHLTHELKPSSTRSFHISIPISDPDVLDIKKSKGVWILRPDSSLGAASSGCGSGDSGAVAAIRMPILHVSNFKGGTPEFVETSYGVLVLVLPNSNSRVWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMARKARSSFEKVMSHGMRRPMHSILGLLSMFQEDNNNVRPEQKIVIDSILKVSNALSRLINDVMEIAANDNGSFRLEMKPFRLHSMMREASCTAKCLCIYKGFGLEVDVDKSLPDLVIGDEARSFQVILHMIGYLLNIYDKGTLIFQVYLESDSGDKDDRSFGIWRSSIQNEFVHIKFNFQINGINFQSDESVPTRNYTGRRHYNNEPKEGLSFSMCKTLVQMMQGNIWISTNSLGLAQGMTLLLKFQLGSSHGRLILAPKDFSTSQFRGLNVVLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISASGNSFKIILLDLHMPEMDGFEVARRIRKFQSHNWPLIIAFTASAEEHIKERCLQVGMNGLIRKPILLHEIADELRTVLQRAGEKL 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03834 761 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 758 - -
Pumo5g03834 761 Gene3D - 635 760 - -
Pumo5g03834 761 ProSiteProfiles Histidine kinase domain profile. 376 615 IPR005467 -
Pumo5g03834 761 CDD HisKA 368 431 IPR003661 GO:0000155|GO:0007165
Pumo5g03834 761 Pfam Response regulator receiver domain 637 749 IPR001789 GO:0000160
Pumo5g03834 761 ProSiteProfiles Response regulatory domain profile. 636 754 IPR001789 GO:0000160
Pumo5g03834 761 FunFam Ethylene receptor 4 336 432 - -
Pumo5g03834 761 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 440 597 IPR036890 -
Pumo5g03834 761 SUPERFAMILY GAF domain-like 186 336 - -
Pumo5g03834 761 Gene3D - 435 616 IPR036890 -
Pumo5g03834 761 Coils Coil 339 369 - -
Pumo5g03834 761 SMART gaf_1 183 343 IPR003018 GO:0005515
Pumo5g03834 761 Gene3D - 161 334 IPR029016 -
Pumo5g03834 761 SMART REC_2 635 750 IPR001789 GO:0000160
Pumo5g03834 761 CDD REC_ETR-like 635 750 - -
Pumo5g03834 761 SUPERFAMILY CheY-like 631 756 IPR011006 -
Pumo5g03834 761 CDD HATPase_ETR2_ERS2-EIN4-like 477 609 - -
Pumo5g03834 761 Gene3D - 335 434 - -
Pumo5g03834 761 Pfam GAF domain 185 333 IPR003018 GO:0005515
Pumo5g03834 761 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 436 IPR036097 GO:0000155|GO:0007165
Pumo5g03834 761 PIRSF Ethylen_sen_hybr_HK 1 761 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Pumo5g03834 761 SMART HisKA_10 369 436 IPR003661 GO:0000155|GO:0007165
Pumo5g03834 761 Pfam His Kinase A (phospho-acceptor) domain 370 436 IPR003661 GO:0000155|GO:0007165
Pumo5g03834 761 FunFam Ethylene receptor 633 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03834 Pumo-Chr5 88287503 88292048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03834 23 759 Miscellaneous Gene Families AT3G04580 62.483 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo5g03834 GAF 5.5e-13 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03834 K14509 - gmx:100805023 1385.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03834 5 88287503 88292048 Pumo3g01583 3 24404746 24409128 ECH
Pumo5g03834 5 88287503 88292048 Pumo5g03834 5 88287503 88292048 ECH