Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03830 ATGACTCACAAGAAATGCTCCTTTACGAAGTTACTGGCACAGGCTGGTGCAAATTCCTCGGAAACAAGATCATCACCATCAGTGTTTCATGATTCAAGTACTGTTGCCGAAGCAGAGGAGGCAGAGGTTGAGGTTTCGTACAGAGGGGTTCGAAGGAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGACTCTACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCGTTGGCTTATGACCAGGCTGCGTTGGCCATGCGAGGGTCCATGGCAGTGTTGAATTTCCCAGCTGAGATGGTTCGCCAATCGCTTCGGAACATGGACTATGGTTTTGACGAAGGTTGCTCTCCAGTTCTGGAGTTGAAGAAGAGGCACTTGATGAAGAGAAAATCATCGTTGAAAAAGAAGGTGCAGCAAGAGGGGGTGTCCCAAAATGTGATGGTGTTGGAGGACTTGGGGGCAGAGTATTTGGAACACCTTCTTACTCTGTCCCAGAATATGGATGCTTGTTAG 537 0.5084 MTHKKCSFTKLLAQAGANSSETRSSPSVFHDSSTVAEAEEAEVEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPAEMVRQSLRNMDYGFDEGCSPVLELKKRHLMKRKSSLKKKVQQEGVSQNVMVLEDLGAEYLEHLLTLSQNMDAC 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03830 178 SUPERFAMILY DNA-binding domain 47 106 IPR016177 GO:0003677
Pumo5g03830 178 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Pumo5g03830 178 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Pumo5g03830 178 FunFam Ethylene-responsive transcription factor 2 45 106 - -
Pumo5g03830 178 PANTHER DNA-BINDING DOMAIN 27 170 IPR044808 GO:0003700|GO:0009873
Pumo5g03830 178 ProSiteProfiles AP2/ERF domain profile. 46 104 IPR001471 GO:0003700|GO:0006355
Pumo5g03830 178 SMART rav1_2 46 110 IPR001471 GO:0003700|GO:0006355
Pumo5g03830 178 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Pumo5g03830 178 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Pumo5g03830 178 Gene3D AP2/ERF domain 46 106 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03830 Pumo-Chr5 88265760 88266539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03830 44 174 AP2-EREBP Transcription Factor Family AT3G23240 60.294 1.86e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g03830 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03830 K14516 - gmx:100787732 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03830 5 88265760 88266539 Pumo3g01597 3 24645211 24646285 ECH
Pumo5g02850 5 75721557 75722141 Pumo5g03830 5 88265760 88266539 ECH
Pumo5g03830 5 88265760 88266539 Pumo5g03830 5 88265760 88266539 ECH
Pumo5g03830 5 88265760 88266539 Pumo3g02444 3 37106038 37106673 PCT