Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03820 ATGACGAGAACTCCTTGTTGTGAGAGGATGGGATTGAAGAAGGGACCTTGGACTGCTGAAGAAGATCAGATATTGGTTTCTCATATTCAACGATATGGCCATGGAAACTGGCGTGCGCTTCCTAAACAAGCCGGTTTGTTGAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACTTGAGGCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAGCTACATGGAATTCTTGGAAATAGATGGTCTGCTATTGCGGCAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATCGAGAAAAATAGAGTGCACAATGGCAATGCTTCTTCTCATATCTTGCAAGAGGCACAAGCAAATAGTTCGGATGCATCAAGTGCTGCTTCTAGTGTAATGATTGCCAATTACGGTTTACCCTCAAGGAATAATATTCCACCTATTGTAGGTACTGCAGGATTTTACGGTGCAGATACTTTTGGAGAAATTGAGGGCAATCATGCTTCTTGTCAGCTCAGTGAAGAAATGGAATTTTGGTACAATATATTCATCAAATCAGGCCAAACATCATGA 621 0.4138 MTRTPCCERMGLKKGPWTAEEDQILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHGILGNRWSAIAASLPGRTDNEIKNFWHTHLKKRIEKNRVHNGNASSHILQEAQANSSDASSAASSVMIANYGLPSRNNIPPIVGTAGFYGADTFGEIEGNHASCQLSEEMEFWYNIFIKSGQTS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03820 206 Gene3D - 13 66 - -
Pumo5g03820 206 Pfam Myb-like DNA-binding domain 17 75 - -
Pumo5g03820 206 CDD SANT 69 112 IPR001005 -
Pumo5g03820 206 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g03820 206 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g03820 206 CDD SANT 16 61 IPR001005 -
Pumo5g03820 206 Gene3D - 68 143 - -
Pumo5g03820 206 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 141 - -
Pumo5g03820 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo5g03820 206 SMART sant 66 114 IPR001005 -
Pumo5g03820 206 SMART sant 13 63 IPR001005 -
Pumo5g03820 206 FunFam MYB-related transcription factor 13 66 - -
Pumo5g03820 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo5g03820 206 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03820 Pumo-Chr5 88146246 88147688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03820 1 199 MYB Transcription Factor Family AT2G31180 48.085 3.17e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g03820 Myb_DNA-bind_6 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03820 K09422 - gmx:102663040 363.999