Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03814 ATGTTGAAATTAGGACAGACAAAGCTGATTCACTTGGGAGCCTCGAGAGCTATGTCTACATCTTCTCGTGTTCTTCCCACTCCCCTGGAAAACAAGTATATGAAACCCCCAGATTCTTTTCAGCTTTCACCTGTCAGAGATCTGACTGCAAATTCTGCCTCATCAAATTTAATCAGAAGTGCTGGGAAGATGTTCTCATCACCTTCTGAATGTCCCGATGACATCCCTTTTTCGTCTGTTTCACAGCATGATAATGTGTCTCAAGATCCCCCCTTTGTTTCTCAGACATTGGGTGATAATGTGTCTTCTGAAATACATTCAACAGCATTCATTTCTCACCCTCAAGAAAATGAAGATCTTTCCTGGGGACCAGATCCATTTCAAGATATTATTGGCTTTCCTGAAAATGTTTCTGTCCAGCATGACCAGGTGGAAAACAATGCTTGTTACATAAATGATGATAATGTCAAAAGATCTGATTTTGGGGAGTGGGTTGATCAGCTAATGTCAATTGATGATTCTCTTCACCCGAACTGGAGTCAGCTTCTTGGTGATGACAATGTAGCTGAACCAAAACCAAAGGCATCTCAGGTTCCTCAGCAGCAGCATATACCATCTGGAGAAGTTGTTAGTAATTCAGCATCAACTGCACCGCAGACTAAGCCTAGAATGCGTTGGACTCCAGAGCTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGATGGCCTTACCATTTATCATGTAAAAAGCCACTTACAGAAGTATAGAACTGCCAGATACAAACCAGAGTCACCAGAAGGAACGTCTGAGAAAAAGGTGACTCCAATAGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGATTACAGATGGAACTCCAGAAGCGACTTCACGAACAACTTGAGATCCAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAGAGAGAGATGGGTGACAGCAAGGGTAAGGGGTCTTGCTCTCCTTTGGACGAGCCTTCTGCTGCAGCATCAGACACAGTGGTTCCTTCTCCAAATGAGGAAGGTAACAAATTTGAAAGCATTCCAAAAGCCATGCCTGAAGAGAAGGATGCAAGCACAAAGCAAGTGGCAGGTGAAGCTGAAGAAGTGATCAATGAAGATGAAGATGAAGGTGCACCACCCACAAAACGGGTGAAAAGTTCATAA 1293 0.4292 MLKLGQTKLIHLGASRAMSTSSRVLPTPLENKYMKPPDSFQLSPVRDLTANSASSNLIRSAGKMFSSPSECPDDIPFSSVSQHDNVSQDPPFVSQTLGDNVSSEIHSTAFISHPQENEDLSWGPDPFQDIIGFPENVSVQHDQVENNACYINDDNVKRSDFGEWVDQLMSIDDSLHPNWSQLLGDDNVAEPKPKASQVPQQQHIPSGEVVSNSASTAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRTARYKPESPEGTSEKKVTPIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDSKGKGSCSPLDEPSAAASDTVVPSPNEEGNKFESIPKAMPEEKDASTKQVAGEAEEVINEDEDEGAPPTKRVKSS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03814 430 MobiDBLite consensus disorder prediction 186 222 - -
Pumo5g03814 430 Pfam MYB-CC type transfactor, LHEQLE motif 308 352 IPR025756 -
Pumo5g03814 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 198 404 IPR044848 GO:0003700
Pumo5g03814 430 FunFam Myb family transcription factor 220 278 - -
Pumo5g03814 430 Pfam Myb-like DNA-binding domain 223 274 IPR001005 -
Pumo5g03814 430 MobiDBLite consensus disorder prediction 275 295 - -
Pumo5g03814 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 221 275 IPR006447 GO:0003677
Pumo5g03814 430 MobiDBLite consensus disorder prediction 389 405 - -
Pumo5g03814 430 SUPERFAMILY Homeodomain-like 219 275 IPR009057 -
Pumo5g03814 430 MobiDBLite consensus disorder prediction 194 222 - -
Pumo5g03814 430 Gene3D - 220 279 - -
Pumo5g03814 430 Coils Coil 309 329 - -
Pumo5g03814 430 MobiDBLite consensus disorder prediction 350 430 - -
Pumo5g03814 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 219 278 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03814 Pumo-Chr5 88095893 88099988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03814 60 381 G2-like Transcription Factor Family AT3G04450 46.552 1.24e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo5g03814 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03814 - - gmx:100803267 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03814 5 88095893 88099988 Pumo5g03814 5 88095893 88099988 ECH
Pumo5g03814 5 88095893 88099988 Pumo3g02484 3 37695539 37700087 PCT