Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03812 ATGGCCCCTAATCCAAGAGTTAATAAGGCCTTTAGCTTTATGAAGGCCTTAGGAATTTCTGATAAGGAGGTGAAGCCAGTGTTGATAAAGCTGTTACGAGTTTATGACGGAAACTGGGAACTTATTGAGGACGACAATTACCGGACACTTGTAGATGCATACTTTGATTTTGAGAAAGACAAGGGAACTGAAGGTGAGAGAAAAGTTAATGCCAGTTGTCATGGTGGAGAAAAACCAAAACGGGAACCGCTTTCGGTAGATGATGACGGCAAGAATTTATCAACCATGGACAGCTCAAGTGCAGAAGACAATAAGATATCAACGAAGAGTTTTGAACAGAAAATCATTAAGCCATCTCAAACATTCATGAAAGATATTAAGCCCAAAAGCAGTTCACAAGCATCACATCCAATGTTGAGTGAGGTAGAAAAGATCTCAAGTTTACCTCGTGTGGCAGCTAAAGATAGAAAATCATACCCTGAGAAAGCATCATCTGCAGGGCATTGTGGTCATTTCGAGAAAGAGCTCGTGAAGCCAAGAACTAAGAAACCCAAGATACAACTTACTTCAACGAATCATAGTGGTTTATCTGACGCGTCAGATGAAAATCTGTGTGTCAAACCTCTGTCAACTCAGGATCAGGATATGCAAAGCAAAGATGTTGTATTAGCATGCAACAATAACACCACAGCTTATAATGGAAATATTACGATTGCTAGTTCTTCACGTCTGGGAGAAGTAAAAATATCTTTGAATTGTGACTCTGCGTTGGGACAACCAAACTTCTGTATTCCTAATTTGGATGTTGTTATGAGGTTCATGGACAAGAAGTACCTTAGCTCTTGCAACACTGTTGAGCCTCAATTTTCTATGGCAAAGCTATTAGATGACCTTTGCAGGATTTATCTCAAGTTGGGATATCGAAAGGGATCAAATTCCAAGAATGCCAATTCACATTCACAGCAATATGTTAATCAAGGTGAAAGGAATCCCTTTCATTTTATCAGTGACATATCAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAAATTGGCAGTGACGACTTGCCAAAGTTTAATTACATACCATGTAATATAATATATCAAAGTGCTACTGTAAATATTTCATTGGCTCGGATTTCGGAAGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCCTCATCATTGCCTTGTGCATGTGCTCAGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGGACAATTCCTAACAGCTTGTGTGTCTATGAAGAATGAACCTCAAGATCATCATTATGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCCAAGAATGAGTACATGCCCGAACGATGCAAGGGGCATATGGTTAGGAAATTTATAAAGGAATGTTGGAGGAAATGTGGATGTGACATGCACTGCGGGAATAGGATAGTGCAACAGGGTATAACATGCAAATTGCAGGTGTTCTTAACTCGTGAAGGTAAAGGCTGGGGCCTTAGAACGTTAGAAGATTTACCAAAAGGAACTTTCGTGTGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGGATTATGCAGGATAGTGGCAAAGAGAGACATACATATCCTGTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTGAAGGATGAGGAGGCACTATGTTTAGATGCAACAAGCAATGGAAATGTTGGAAGGTTCATCAATCATAGATGCTATGATGCTAATCTCATAGACATTCCTGTGGAAATAGAGAGTCCAGATCACCATTATTATCATCTTGCCTTCTTCACCAACAGGAAAGTAAGTGCATATGAGGAGTTGACATGGGATTATGGTATTGATTTTGATGATGACGACCATCCTATTAAAGCATTTCGGTGTTGCTGTGGAAGTGTCTTCTGCTGTGATAAGAAACAAAAAGGGAAAGGAAAAATAGAAAATCAGGTTCATGTGACTCAACTCAAACAATTGAAGTAA 2022 0.3952 MAPNPRVNKAFSFMKALGISDKEVKPVLIKLLRVYDGNWELIEDDNYRTLVDAYFDFEKDKGTEGERKVNASCHGGEKPKREPLSVDDDGKNLSTMDSSSAEDNKISTKSFEQKIIKPSQTFMKDIKPKSSSQASHPMLSEVEKISSLPRVAAKDRKSYPEKASSAGHCGHFEKELVKPRTKKPKIQLTSTNHSGLSDASDENLCVKPLSTQDQDMQSKDVVLACNNNTTAYNGNITIASSSRLGEVKISLNCDSALGQPNFCIPNLDVVMRFMDKKYLSSCNTVEPQFSMAKLLDDLCRIYLKLGYRKGSNSKNANSHSQQYVNQGERNPFHFISDISKGSEKVKISLIDEIGSDDLPKFNYIPCNIIYQSATVNISLARISEEGCCSDCSGDCLSSSLPCACAQETGGEFAYTPQGLLKGQFLTACVSMKNEPQDHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCDMHCGNRIVQQGITCKLQVFLTREGKGWGLRTLEDLPKGTFVCEYVGEILTNMELYDRIMQDSGKERHTYPVTLDADWGSEKGLKDEEALCLDATSNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNRKVSAYEELTWDYGIDFDDDDHPIKAFRCCCGSVFCCDKKQKGKGKIENQVHVTQLKQLK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03812 673 MobiDBLite consensus disorder prediction 151 200 - -
Pumo5g03812 673 SMART set_7 493 633 IPR001214 GO:0005515
Pumo5g03812 673 Pfam Ubiquitin-binding WIYLD domain 6 56 IPR018848 -
Pumo5g03812 673 CDD SET_SETDB-like 359 627 - -
Pumo5g03812 673 Pfam Pre-SET motif 338 485 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo5g03812 673 SMART preset_2 335 477 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo5g03812 673 FunFam SET-domain containing protein lysine methyltransferase family protein 338 652 - -
Pumo5g03812 673 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 659 - -
Pumo5g03812 673 MobiDBLite consensus disorder prediction 65 88 - -
Pumo5g03812 673 Gene3D SET domain 338 652 IPR046341 -
Pumo5g03812 673 SUPERFAMILY SET domain 345 649 IPR046341 -
Pumo5g03812 673 Pfam SET domain 505 627 IPR001214 GO:0005515
Pumo5g03812 673 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 671 IPR025776 -
Pumo5g03812 673 MobiDBLite consensus disorder prediction 65 107 - -
Pumo5g03812 673 MobiDBLite consensus disorder prediction 91 107 - -
Pumo5g03812 673 Gene3D - 1 60 IPR043017 -
Pumo5g03812 673 MobiDBLite consensus disorder prediction 184 200 - -
Pumo5g03812 673 ProSiteProfiles Pre-SET domain profile. 387 490 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo5g03812 673 ProSiteProfiles SET domain profile. 493 627 IPR001214 GO:0005515
Pumo5g03812 673 MobiDBLite consensus disorder prediction 151 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03812 Pumo-Chr5 88075205 88081423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03812 334 649 Su(var)3-9 homologs AT5G04940 28.274 8.65e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo5g03812 Pre-SET 2.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03812 - - gmx:100802372 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03812 5 88075205 88081423 Pumo3g02491 3 37738613 37745590 PCT