Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03805 ATGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGGTTGAAGATCCACAAGTATGTTGGATTGATGGACAGGTATCAAAACTCAAAGGAAAGGATGCTGAAATTGAAGCAACCAATGGAAAGAAGGTTGTCACAAAGTTATCAAAAATATATCCCAAGGATACAGAAGCTCCTGCGGGTGGAGTAGATGATATGACTAAGCTTCACTATTTGCATGAGCCTGGAGTCCTGCAGAACTTAAAAACTAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGACTACCTCATATTTATGATTCGCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAGTTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGGTTCACGACGGGAAAAGCAATTCAATTTTGGTCAGTGGAGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCGATACCTTGCTTTCTTAGGAGGTAGGGCTGCCACTGAAGGACGAACCGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCTGCCATTCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAGATTAATGATCCTGAACGCAACTACCACTGCTTTTATTTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAATCCTAAAACGTTTCATTACCTTAACCAGTCAAAATGCTATGAACTGGATGATATAAGTGATTCCCGCGAGTATCTTGCTACCAGGAGAGCTATGGATATTGTCGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGGAATATTGATTTTGCCAAAGGAAGGGAAATTGATTCATCAATTCCAAAAGATGACAAATCCAAATTCCACTTAAAAACAACTTCTGAGCTTCTTATGTGCGATGCTGGTGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAACGGAGCCTTGATCCTGAAAGTGCAGCAGTCAGCAGAGATGGCTTGGCAAAAACAATTTATTCTAGGCTCTTTGACTGGTTGGTGAACAAGATTAATAATTCAATCGGACAAGACTCCAATTCTAAATCTTTGATTGGGGTGCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTCTGCATTAATTTTACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAGATGGAACAAGAAGAATACACAAAGGAGAAGATCAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATAATTACACTCCTTGACGAAGCTTGCATGTTTCCAAAGTCTACACACGAAACATTTTCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTCATTAAGCCAAAATTGTCTCGAACAGATTTCATTATTTCTCATTATGCTGGCGAGGTGCAGTACCAGTCTGACCAATTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTCCTTTTGTAGCAGGCCTTTTTCCTCCACTTCCAGAAGAGACATCCAAGTCTTCAAAATTTTCTTCAATTGGTTCTCGATTTAAGCTGCAACTACAGCAATTAATGGAAACACTAAGCTCTACAGAGCCTCATTACATTAGATGTGTTAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATGCAAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAAGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAATTTGTAAACCGATTTTCCCATCTTGCTCCAGAGTTCACAGAAGCACACCATGATGAGAAGACTGTTTGCCAAAAGATTCTGGAAAAAGTAGGGCTTAAAGGATATCAGATTGGAAAAACAAAGGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAAGTACTCAGTAGAGCAGCAAAAATTATCCAACGGCGTATACGAACCCATCAAGCTCGTAAACATTATCTTGCACTACGAAAGAAGACTATATATGTGCAGTCTCTGTGGAGAGGAAGACTTGCACTCAAACTTTATCAGAACAAGAGAAGGGAGGCAGCTGCTGTGAAAATTCAGAAGAACATACGCAGATATGAAGCTAGGAAAACCTATATTAAACTCCAAGCATCAGTACTTACTTTGCAAACAGCTTTAAGGGCAATTGCTTCCCTCAAGGAGTTCAGATTTAGGAAACAGACTAAAGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCACAAAGCTGCGTCATATTATAAGAAGCTCAAGAAAGGTGCAATTGTCACACAATGCCGATGGAGGGGGCGCATGGGCAGGAAAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGCGCACTTAAAGATGCAAAGGACAAGCTTGAAAAAAGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAGAAAAGTTTAAGGACCAACCTCGAAGAATCCAAAGCACAAGAGATAGCAAAACTGAAGAATTCACTGCAGGAGATGCAGAACAAAGTTGATGAAAGCAATGCATTGCTTATAAAGGAGAGAGAGAATGCAAAGAAAGCTATTGAAGAAGCACCTCCTGTTGTTAAAGAAACTAAGGTTATTGTTGAAGACACTCAGAAGATTGAATTGCTAACAATGGAAGTTGAGAGTCTAAAGACATCCCTTGAGTCAGAGAAACAGAAAGCTGACGAGAAATATAATGAAGCCAAAGCTTGTAGTGAAGAAAGGGGAAAAAAATTAGAAGACACAGAGAAGAAGTTTCGTCAGCTCCAAGAATCCTTGACCAGGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAAGTTCTACGTCAACAAGCCCTGTCCATGGCACCTAATAAGTTCCTCTCAGGACGCTCTAGATCAATTATTCAGAGAACTGACAGTGGACATTTTGGAGCGGAAGCAAAGACAACTTTGGATATGCATAGCACATCAATGAACCACAGGGAATCCTCTGAAGTGGAGGATAAACCGCAGAAGTCACTAAATGAGAAACAACTGGAGAGCCAAGAGTTACTCATTAAATGCATTGGACAACACCTAGGCTTTGCTGGGAATAGACCAATTGCTGCTTGTATCATATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTTGACCGTACTAGCGTTTTTGATCGTATAATTCAAACTATTGGTCATGCAATTGAGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATGCAACACCTCTACACTTGTCTTGTTACTCCAGCGCACACTTAAGGCAAGTGGTGCTGCTGGAATGGCTCCTCAACGCCGTCGTTCTTCATCAGGGACCCTGTTTGGGCGGATGACACATAGTTTCCGTGGAACTCCAGCAGGAGTCAATCTTTCCCTAATCAATGGTAGCATGAGCGGTGGTGTAGATTCATCAAGACAAGTTGAAGCCAAATACCCTGCTCTGCTTTTCAAACAGCAGCTTACAGCTTATGTGGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCCAGAACATCCAGAGCGAGCTTGGTTAAGGGAGCATCACGTTCAGTTGCGAATACTGAAGCCCAGAAAGCTTTGATTGGTCACTGGCAGGGGATAGTCAAGGGACTTGCGAACTTCTTAAATACTTTGAAAGAAAATCATGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACTCAAATGTTTTCTTTCATCAATGTCCAACTTTTCAATAGTCTTCTTCTAAGACGTGAGTGCTGCTCTTTTAGTAATGGAGAATATGTGAAATCTGGTTTGGCTGAATTGGAGGATTGGTGTTATAATGCCACTGCTGAGTACGCTGGTTCAGCTTGGGATGAGCTCAAACATATAAGACAGGCTATTGGATTTTTGGTCATACATCAGAAACCAAGGAAAGCGCTGAATGAAATAACTAATGAGCTGTGCCCAGTCCTCAGTATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAGTATGGCACACATAGCGTATCCCCTGATGTCATATCTAATATGAGAGTGTTGATGACTGAAGATTCAAATCATGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACTTATCGAAGTCGAAGGATCAGATAGATATAGCTGATATAGAGCCCCCTCCACTAATACGTGAAAACACTGGCTTTAGTTTTTTGTTGCCACTCTCAGACTGA 4581 0.4045 MGTPVNIIVGSHVWVEDPQVCWIDGQVSKLKGKDAEIEATNGKKVVTKLSKIYPKDTEAPAGGVDDMTKLHYLHEPGVLQNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDSHMMQQYKGAPFGELSPHVFAVADVAYRAMVHDGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYFLCAAPQEEIEKYKLGNPKTFHYLNQSKCYELDDISDSREYLATRRAMDIVGISQKEQEAIFRVVAAILHIGNIDFAKGREIDSSIPKDDKSKFHLKTTSELLMCDAGALEDALCKRVMITPEEVIKRSLDPESAAVSRDGLAKTIYSRLFDWLVNKINNSIGQDSNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEKINWSYIEFVDNQDVLDLIEKKPGGIITLLDEACMFPKSTHETFSNKLYQTFKNHKRFIKPKLSRTDFIISHYAGEVQYQSDQFLDKNKDYVVPEHQDLLSASKCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENANIMQQLRCGGVLEAIRISCAGYPTRRAFFEFVNRFSHLAPEFTEAHHDEKTVCQKILEKVGLKGYQIGKTKVFLRAGQMAELDARRAQVLSRAAKIIQRRIRTHQARKHYLALRKKTIYVQSLWRGRLALKLYQNKRREAAAVKIQKNIRRYEARKTYIKLQASVLTLQTALRAIASLKEFRFRKQTKASIIIQARWRCHKAASYYKKLKKGAIVTQCRWRGRMGRKELRKLKMAARETGALKDAKDKLEKRVEELTWRLQLEKSLRTNLEESKAQEIAKLKNSLQEMQNKVDESNALLIKERENAKKAIEEAPPVVKETKVIVEDTQKIELLTMEVESLKTSLESEKQKADEKYNEAKACSEERGKKLEDTEKKFRQLQESLTRLEEKITNLESENQVLRQQALSMAPNKFLSGRSRSIIQRTDSGHFGAEAKTTLDMHSTSMNHRESSEVEDKPQKSLNEKQLESQELLIKCIGQHLGFAGNRPIAACIIYKCLLHWRSFEVDRTSVFDRIIQTIGHAIETQDNNDVLAYWLCNTSTLVLLLQRTLKASGAAGMAPQRRRSSSGTLFGRMTHSFRGTPAGVNLSLINGSMSGGVDSSRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGASRSVANTEAQKALIGHWQGIVKGLANFLNTLKENHVPPFLVRKVFTQMFSFINVQLFNSLLLRRECCSFSNGEYVKSGLAELEDWCYNATAEYAGSAWDELKHIRQAIGFLVIHQKPRKALNEITNELCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAVSNSFLLDDDSSIPFSVDDLSKSKDQIDIADIEPPPLIRENTGFSFLLPLSD 1526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03805 1526 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 785 IPR027417 -
Pumo5g03805 1526 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 Pfam DIL domain 1345 1448 IPR002710 -
Pumo5g03805 1526 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 CDD MYSc_Myo11 76 720 IPR036018 -
Pumo5g03805 1526 Coils Coil 1014 1048 - -
Pumo5g03805 1526 Gene3D - 785 831 - -
Pumo5g03805 1526 Gene3D - 832 882 - -
Pumo5g03805 1526 Gene3D - 734 784 - -
Pumo5g03805 1526 Gene3D - 439 623 - -
Pumo5g03805 1526 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Pumo5g03805 1526 Coils Coil 780 800 - -
Pumo5g03805 1526 Gene3D Kinesin motor domain 65 662 IPR036961 -
Pumo5g03805 1526 SMART iq_5 757 779 IPR000048 GO:0005515
Pumo5g03805 1526 SMART iq_5 734 756 IPR000048 GO:0005515
Pumo5g03805 1526 SMART iq_5 853 875 IPR000048 GO:0005515
Pumo5g03805 1526 SMART iq_5 830 852 IPR000048 GO:0005515
Pumo5g03805 1526 SMART iq_5 782 804 IPR000048 GO:0005515
Pumo5g03805 1526 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Pumo5g03805 1526 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Pumo5g03805 1526 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Pumo5g03805 1526 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Pumo5g03805 1526 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Pumo5g03805 1526 CDD MyosinXI_CBD 1107 1492 IPR037975 GO:0007015
Pumo5g03805 1526 Coils Coil 975 1009 - -
Pumo5g03805 1526 Gene3D - 252 310 - -
Pumo5g03805 1526 Gene3D - 667 733 - -
Pumo5g03805 1526 Coils Coil 916 950 - -
Pumo5g03805 1526 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 ProSiteProfiles IQ motif profile. 735 762 IPR000048 GO:0005515
Pumo5g03805 1526 FunFam unconventional myosin-Va 737 785 - -
Pumo5g03805 1526 ProSiteProfiles Dilute domain profile. 1156 1469 IPR002710 -
Pumo5g03805 1526 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Pumo5g03805 1526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 883 IPR027417 -
Pumo5g03805 1526 FunFam unconventional myosin-Va 833 881 - -
Pumo5g03805 1526 CDD Prefoldin 917 1047 - -
Pumo5g03805 1526 SMART DIL_2 1344 1451 IPR002710 -
Pumo5g03805 1526 FunFam Class V myosin 439 577 - -
Pumo5g03805 1526 FunFam Myosin 2 312 429 - -
Pumo5g03805 1526 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Pumo5g03805 1526 FunFam Myosin heavy chain 252 307 - -
Pumo5g03805 1526 Coils Coil 877 911 - -
Pumo5g03805 1526 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo5g03805 1526 PANTHER MYOSIN 54 1457 - -
Pumo5g03805 1526 ProSiteProfiles IQ motif profile. 831 857 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03805 Pumo-Chr5 88018613 88031340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03805 1 1526 Myosins gene family AT1G54560 81.765 0.0 2650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03805 K10357 - gmx:100816792 2692.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03805 5 88018613 88031340 Pumo5g03805 5 88018613 88031340 ECH
Pumo5g03805 5 88018613 88031340 Pumo3g02528 3 38223572 38230021 PCT