Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03783 ATGACAAGTGTTATGGAGGCAGAGCGAGACAAGTACAAGATGATCAACTTTGAAGAAACCGAGTTGCGACTCGGCCTGCCAGTACTGAGTGGAAACGAGGGCGAGCCCACGCTCAAAAACACTTGCAGTACTGGGAAGAGGGGCTTTTCGGATACAACCAGTGCTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAACTAATGCCTCATCTGACGTAGCTAAAGAGAAGAACATCACTGCTGCTGCAGCTAACTCCGCTGTACCTTCTCCTCCTCGTTCTAACGACCCAGCTAAGCCACCCGCAAAGGCACAAGTGGTAGGGTGGCCACCAGTGAGGTCATTCAGAAAGAACATAGTTAACAACGTTCAAAGGAGTAACAACAACAATGAGGGGGAAAAAGCCGGCACAAGTAGTAGCAACAATGTGAACATGGGAGCAGCTTTCGTGAAGGTGAGCATGGATGGTGCTCCCTATTTACGCAAGGTGGATTTGAAGTTGTACAAGAGCTACCAAGAGCTGTCGGATGCACTGGCCAAAATGTTCAGTTCATTCACCATTGACAAGTGTGGATCCCAAGGCATGAAAGACTTCATGAACGAGAGCAAATTGATTGATCTTCTCAACGGCTCTGATTACGTACCAACCTATGAAGACAAAGATGGTGACTGGATGCTCGTGGGTGACGTACCGTGGGAAATGTTCGTGGAATCATGCAAGCGTCTGCGCATAATGAAAGGATCTGAGGCAATTGGGCTAGCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAG 801 0.4819 MTSVMEAERDKYKMINFEETELRLGLPVLSGNEGEPTLKNTCSTGKRGFSDTTSASVDLKLNLSSTSTNASSDVAKEKNITAAAANSAVPSPPRSNDPAKPPAKAQVVGWPPVRSFRKNIVNNVQRSNNNNEGEKAGTSSSNNVNMGAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDKCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03783 266 MobiDBLite consensus disorder prediction 122 141 - -
Pumo5g03783 266 Pfam AUX/IAA family 19 257 IPR033389 -
Pumo5g03783 266 SUPERFAMILY CAD & PB1 domains 140 247 - -
Pumo5g03783 266 MobiDBLite consensus disorder prediction 83 107 - -
Pumo5g03783 266 FunFam Auxin-responsive protein 143 258 - -
Pumo5g03783 266 ProSiteProfiles PB1 domain profile. 148 248 IPR000270 GO:0005515
Pumo5g03783 266 Gene3D - 142 260 - -
Pumo5g03783 266 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 253 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03783 Pumo-Chr5 87818847 87821890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03783 152 251 B3 DNA Binding Superfamily AT3G61830 35.000 1.01e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo5g03783 AUX_IAA 5.4e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03783 K14484 - gmx:100796888 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03783 5 87818847 87821890 Pumo5g03783 5 87818847 87821890 ECH