Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03779 ATGGAAAGGGTATTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCAGCGAGGAAGGAGTCAAAGTCAAAGATGAACCGGAGCGAATCCGAGTGGGCCTTTCAGCAGTTCCTACAAGAGGCTGCTTCTTCATCTTCTGATCATGATCATGATCATGATGTTAAACTCAAAAACAACATGAACATCCCTGCTGTTGATTCCGATGACTACCATGCTATTCTTAAGACCAAGCTTAATCTAGCATGCGCTGCTGTTGCTTTGACTCGGGGATCTTTGGTCAAATCTCAAAATCCTGACAGTGGACCACAGGCATCTAATTCTTCTGAAGTTGGATCGCAGGCTACCTTAAAAGGATCTGGGCCTTTTGGAAATGATCCCTCTAAATTACAAAATAAAGATGTCAAAGCACAAATTGGGATTCCTTCCTCACCCGCTGTCGCAATGAGGCCAACAATAAGTGGATCATCAAGAGAACAATCAGATGATGAGGAAGCGGAGGGAGAGATTAATATGAATGAAAACATGAATCCTGTTGATGCAAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCTGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTGGAGACACAGGTCTCCCAATTAAGAAGTGAAAATTCTTCATTGTTAAAGCGCTTCACGGATGTGAGCCACAAATACAATAATGCTGCAGTTGACAACAGAGTACTGAAAGCCGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATAACTGGGTTGAACCCAATGCTTCATGCCATGACTGAGATATCATCAATGGGAATGCCATTGTTTGATGAAAGCCCTTCTGAGACATCAGCTGATGCTGCTGTTCCTGTGCAAGAAGACCCAAATCATCACCTTTGCCAACCCACTTCTACTAATAATGGGTTGGGAGGCATTTCTTCAATTGAAACTGCAGCAGTGGTAGGTGGGAACAAAACGGGGAGAACAGCTTCCCTGCATAGAGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGAGGTGGTGCAGATTCGCGTGGACCTCCTTCTAATGGAGAGCAATAA 1110 0.4414 MERVLSVDEISEQYWVAARKESKSKMNRSESEWAFQQFLQEAASSSSDHDHDHDVKLKNNMNIPAVDSDDYHAILKTKLNLACAAVALTRGSLVKSQNPDSGPQASNSSEVGSQATLKGSGPFGNDPSKLQNKDVKAQIGIPSSPAVAMRPTISGSSREQSDDEEAEGEINMNENMNPVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRSENSSLLKRFTDVSHKYNNAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMLHAMTEISSMGMPLFDESPSETSADAAVPVQEDPNHHLCQPTSTNNGLGGISSIETAAVVGGNKTGRTASLHRVASLEHLQKRIRGGADSRGPPSNGEQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03779 369 SMART brlzneu 178 242 IPR004827 GO:0003700|GO:0006355
Pumo5g03779 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Pumo5g03779 369 Pfam Basic leucine-zipper C terminal 249 358 IPR020983 -
Pumo5g03779 369 SUPERFAMILY Leucine zipper domain 182 232 IPR046347 GO:0003700|GO:0006355
Pumo5g03779 369 MobiDBLite consensus disorder prediction 94 180 - -
Pumo5g03779 369 Pfam bZIP transcription factor 181 232 IPR004827 GO:0003700|GO:0006355
Pumo5g03779 369 Gene3D - 181 235 - -
Pumo5g03779 369 FunFam BZIP transcription factor 180 231 - -
Pumo5g03779 369 MobiDBLite consensus disorder prediction 94 127 - -
Pumo5g03779 369 Coils Coil 191 225 - -
Pumo5g03779 369 Coils Coil 240 260 - -
Pumo5g03779 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 234 IPR004827 GO:0003700|GO:0006355
Pumo5g03779 369 PANTHER BASIC LEUCINE ZIPPER 63 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03779 Pumo-Chr5 87774815 87780929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03779 1 271 bZIP Transcription Factor Family AT4G02640 38.462 1.19e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo5g03779 bZIP_C 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03779 K25784 - gmx:778137 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03779 5 87774815 87780929 Pumo5g03779 5 87774815 87780929 ECH
Pumo5g03779 5 87774815 87780929 Pumo3g01875 3 29807864 29810382 PCT