Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03776 ATGGAGTTTCCTCCGAACCTTTTGGCAGACGAGGCGAGCCCAGAATGGATGAACAAAGGAGACAATGCATGGCAGTTAATGGCAGCAACAGTGGTGGGTCTCCAAAGCATTCCGGGGCTGGTAATTTTGTATGGAAGCCTAGTGAAGAAGACATGGGCCATTAACTCTGCTTTCATGGCCTTCTATGCCTTCGCGGCCGTTCTTCTTTGCTGGGTGGCGTGGGGATTCCGCATGTCATTCGGCGAGAAAATGGTATTCTTCTTGGGGAAACCCGGGGTGGCGTTGGACGACAAGTTTCTTCTGGGGAAAGCTTTTCTGGGGCTCTTTCCCACCGCTACGATGGTGTTTTTTCAGGGCGTCTTTGCGGGGATTACTTTGATCTTGATCGCTGGGGCGTTGCTCGGGAGGATGAACTTTCGTGCATGGATGCTGTTTGTGCCGCTTTGGGTTACATTTTCCTACACTGTCACTGCCTTTAGCATTTGGTGCCCCGATGGGTGGTTGGCAAAGCTTGGAGTTATTGATTTCTCTGGAGGATACGTTATTCACCTCTCCGCTGGAGTTGCTGGTTTTACTGCAGCTTATTGGGTGGGTCCACGATCTGAGAAGGAAAGAGAGATGTTTCCATCAAAATCAAACAACATGGTTGTGGTGCTTGCAGGCGCTGGCCTGCTTTGGATGGGTTGGAGTGGGTTCAACGGTGGAGGTCCGTTCGTGGTGAGCACGGTGGCATCTCTGGCGGTGCTTAACACACACGTGTGTGCTGCAGCCAGCATCATCGTCTGGGTCCTACTCGACACTTTCTACTTTGGTAAGCCCACTGTGTTTGGCGCCGTACAGGGCATGATCACTGGCCTCGTTTGCATCACACCTGCCGCAGGAGTTGTGCAGGGGTGGGCAGCAATTTTGATGGGTTTGATCTCAGGAAGCATTCCCTGGTACACAATGATGGTCCTCCATAACAAGCTCACCTTCTTAAAGCAAATCGACGACCCCATGGCGGTGTTCCACACCCATGCCGTCGCCGGAGCTCTCGGCGGCATCCTCACCGGCCTCTTCGCCGTCCCTAAACTGTGCCGTCTCTTCTACATGGTGCCCGATTGGGACAAATACATTGGCCTCGCCTATGGCCTTCAGAACGGTGCAACTCAAAAAGGTTTAAGACAAATGGCCATTCAAGTCGGGGCCATAGTTTTCGTTATCATCTTCAACTTTGTTACGACGAGTTTGATTTGCTTGCTCGTGGGGACCATTGTGCCACTCAGGCTTGACACCGATGCGCTGCAAATGGGTGACAAGGCAGTGCATGGAGAAGAGGCTTTCGCTTTGTATGGTGAGCCTGCAGCGAACTTTGAGAACCTGAAGCACAATAAAGTTTATGATACTCGAGACTTTTCGTTCGTTAGAGACACAAGGTCATTTGGCCACCTTCAAATGGTATAA 1443 0.5149 MEFPPNLLADEASPEWMNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWGFRMSFGEKMVFFLGKPGVALDDKFLLGKAFLGLFPTATMVFFQGVFAGITLILIAGALLGRMNFRAWMLFVPLWVTFSYTVTAFSIWCPDGWLAKLGVIDFSGGYVIHLSAGVAGFTAAYWVGPRSEKEREMFPSKSNNMVVVLAGAGLLWMGWSGFNGGGPFVVSTVASLAVLNTHVCAAASIIVWVLLDTFYFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSIPWYTMMVLHNKLTFLKQIDDPMAVFHTHAVAGALGGILTGLFAVPKLCRLFYMVPDWDKYIGLAYGLQNGATQKGLRQMAIQVGAIVFVIIFNFVTTSLICLLVGTIVPLRLDTDALQMGDKAVHGEEAFALYGEPAANFENLKHNKVYDTRDFSFVRDTRSFGHLQMV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03776 480 PANTHER AMMONIUM TRANSPORTER MEP2 6 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Pumo5g03776 480 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Pumo5g03776 480 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Pumo5g03776 480 PRINTS Rhesus blood group protein signature 247 269 IPR002229 GO:0005886
Pumo5g03776 480 PRINTS Rhesus blood group protein signature 216 234 IPR002229 GO:0005886
Pumo5g03776 480 PRINTS Rhesus blood group protein signature 302 320 IPR002229 GO:0005886
Pumo5g03776 480 Pfam Ammonium Transporter Family 23 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
Pumo5g03776 480 SUPERFAMILY Ammonium transporter 16 423 - -
Pumo5g03776 480 NCBIfam ammonium transporter 21 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Pumo5g03776 480 FunFam Ammonium transporter 6 444 - -
Pumo5g03776 480 Gene3D Ammonium transporter AmtB like domains 6 457 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03776 Pumo-Chr5 87748529 87751917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03776 112 464 Inorganic Solute Cotransporters AT2G38290 53.258 3.60e-122 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03776 K03320 - gmx:100782944 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03776 5 87748529 87751917 Pumo5g03776 5 87748529 87751917 ECH