Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03770 ATGGAGAGCGCACTGCCCTGTTCTGGCGATAAAACTCTACAAGAATTCTTTAAAGTTTTCCTGCTCCAGAAAGGTTCTACCCAGTTGCAAATACCAACATCTTTCACCAAGTTTTTCAATGAAGTCATTCCATGCAATGTCACCCTTGTAGATCACGATAGAAAATCTTGGGATGTTTACTTGGAGAAAATCGAGGGTTGCTTGGTTTTTAAAAATGGGTGGCAGCCATTTGCCAGGGAGAAAGATTTAGAAGATGGGGACTTCTTGGTTTTTCAGTATGATGGCAGGTCTACGTTTAATGTGAAGATATTTTCGAAAACTGGATGCAGGAAAGTGGCTACACCTGCAAGTAGTGAAAAAATTGTTCACACTGTGATTTTGGATGAAGATTCTGAGCAGCGTTGTGATAAAAAAATCCAGTGCGATCGTAAACGGAAACAGTCACCGCCAAGTCTCAAAACAAATGAGGAATCAATGTTAGAAGGTCCATGTCCATCCAAAGGAGCTCGGCGCGAATCAAAAAGAGTTTATGAAGAAAAGGATGACCACAATGAGAAGAAACCTGGTCCAACAAAGCGCGTTCCATTGCAGAATCCTCATTTTCAGATATATTTTAATGCTCCCTGGAGACTGAAAAAAGTGGAACTTCCTAGAAGTGTGCTGAGGAAAATGAATATCAAGCTGATATCGAAGATAAGTCTCAGAGATGAGAATGGCAAATTATGGCTGGCGTCGATCATTTCCTCAAGGAATGAGCATCGATATTTTTTGGGAGGTGGATGGTATGATTTCCAGCGGAGTTACAATATTCAAGAAGGGCACCAATGTGATTTTAAGTTTGTTGTTGATAAAGCAAACGTAGCCCAAGAACTGCTTGTGCGCGTACGTTCAAATTGCTCATTGCGTTGGGTGGACTGCAAATAA 924 0.4113 MESALPCSGDKTLQEFFKVFLLQKGSTQLQIPTSFTKFFNEVIPCNVTLVDHDRKSWDVYLEKIEGCLVFKNGWQPFAREKDLEDGDFLVFQYDGRSTFNVKIFSKTGCRKVATPASSEKIVHTVILDEDSEQRCDKKIQCDRKRKQSPPSLKTNEESMLEGPCPSKGARRESKRVYEEKDDHNEKKPGPTKRVPLQNPHFQIYFNAPWRLKKVELPRSVLRKMNIKLISKISLRDENGKLWLASIISSRNEHRYFLGGGWYDFQRSYNIQEGHQCDFKFVVDKANVAQELLVRVRSNCSLRWVDCK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03770 307 Gene3D - 8 109 IPR015300 -
Pumo5g03770 307 Gene3D - 194 296 IPR015300 -
Pumo5g03770 307 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Pumo5g03770 307 SMART B3_2 16 107 IPR003340 GO:0003677
Pumo5g03770 307 SMART B3_2 201 299 IPR003340 GO:0003677
Pumo5g03770 307 MobiDBLite consensus disorder prediction 167 190 - -
Pumo5g03770 307 CDD B3_DNA 210 281 IPR003340 GO:0003677
Pumo5g03770 307 PANTHER B3 DOMAIN-CONTAINING 12 284 - -
Pumo5g03770 307 CDD B3_DNA 16 105 IPR003340 GO:0003677
Pumo5g03770 307 MobiDBLite consensus disorder prediction 139 196 - -
Pumo5g03770 307 SUPERFAMILY DNA-binding pseudobarrel domain 196 281 IPR015300 -
Pumo5g03770 307 ProSiteProfiles B3 DNA-binding domain profile. 216 297 IPR003340 GO:0003677
Pumo5g03770 307 SUPERFAMILY DNA-binding pseudobarrel domain 15 109 IPR015300 -
Pumo5g03770 307 Pfam B3 DNA binding domain 17 106 IPR003340 GO:0003677
Pumo5g03770 307 Pfam B3 DNA binding domain 213 296 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03770 Pumo-Chr5 87631175 87635464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03770 15 298 B3 DNA Binding Superfamily AT5G66980 30.841 8.45e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo5g03770 B3 2.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03770 - - gmx:102669908 528.865