Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03767 ATGCGGTGTAGAGGTGGAGAGGGAAATCTCTTTCTAGTTGATGACATGGAGCAGTATGAAGTACTTGAGCAAATCGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTCGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCACATCAGGAGATGGAGCTCCTCTCCAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTTCCTGAGGAGAAACTATGTAAGTGGCTTGTTCAGCTTCTCATGGCACTTGATTACTTGCACGTGAACCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTGCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGGCCCTGATTAACAAGATTAATAAGTCCATAGTAGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCAGAGCTACTTGGGCACCGACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACATTGCCAGGTCATTGGCCAGAATCCAACTACATGAAGAAATCTAGATTTTTGAAGTCAGAAGATGATCCTGTTTCCCTCTCTGGGTATAAGTCGCATTCTTTTAGCAATGATCGGACTTTAAATCCTAGTGTATCAGGAGCAGAGCAAGATTCTCTATGCTCTACGCTAGAGATAGATTGTACTCCTGATAATTTAAATCAAAGATTTGCTGAACTTTCTGTTGGAGACAACCACAATGTGAAGTCACTCCATAAGCTGGCCGTTTCCAGAACTTCTAGTAATACCAAGACTCCTAGGCTAACTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGGTATCCTCAAAGAATCATAAGACGCTTCCTGCTTCACACAATACGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTTCCAAGAAGTTGTGCCATTCAGCAGCCTCCTCGCAGGCCTAGTATTGGTTTACTTGACCATGTAAATTCGCCCAATATTTCAGTTAACTCTCCCCGTATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGATCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGGCACAAGGTTCCTCAGGCTCCCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTAGGCCAGGCTGTACAGATGCTTGGCAGGGAATCAAGCGCAGCATGTTCAAGAAAAACGATAAGGATAAAAGTGGCTCATCTGATCAAAATGCAACTGCTGGAGCATCAAGCCACAACTCTTCAGACTTGTGCCACCGACAGTTTGATACTTCGTCATTCCAACAAAGGGCTGAGGCCTTAGAAGGTTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTATGGAGAACTTGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCGAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTAAAAGAGAACACTTTCAACCAGGGAAAAACTGCTGTAGGGTGTGTTTGGTTTGCAGTTGGATTGGCTCAAACGGCCGTTGAACGGAGAAGTAACAAATTGTTACTTCTCCATTTTGTGCATTGGAATGCGCAAACGGATGTTTGGTGTCTCTCAAACGGAAATCCAAACACGCACGTAATATCTCATATAGTCATGTTTGTAGAGTTCGGTGTTTCTTCTTACTTACATTTAGACAGCCGATTTTTATAG 2124 0.4237 MRCRGGEGNLFLVDDMEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHRHLQPYVLKVHLKINSPRRSTLPGHWPESNYMKKSRFLKSEDDPVSLSGYKSHSFSNDRTLNPSVSGAEQDSLCSTLEIDCTPDNLNQRFAELSVGDNHNVKSLHKLAVSRTSSNTKTPRLTASKASATPKKSMVSSKNHKTLPASHNTKQPVHTTRRASLPFPRSCAIQQPPRRPSIGLLDHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSSGSPPCGNDSTLIDKCTIKVCDTSYVRPGCTDAWQGIKRSMFKKNDKDKSGSSDQNATAGASSHNSSDLCHRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSLKENTFNQGKTAVGCVWFAVGLAQTAVERRSNKLLLLHFVHWNAQTDVWCLSNGNPNTHVISHIVMFVEFGVSSYLHLDSRFL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03767 707 CDD STKc_Nek 18 268 - -
Pumo5g03767 707 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Pumo5g03767 707 MobiDBLite consensus disorder prediction 380 426 - -
Pumo5g03767 707 FunFam Serine/threonine-protein kinase Nek2 99 289 - -
Pumo5g03767 707 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Pumo5g03767 707 MobiDBLite consensus disorder prediction 483 503 - -
Pumo5g03767 707 Gene3D Phosphorylase Kinase; domain 1 5 98 - -
Pumo5g03767 707 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 16 586 - -
Pumo5g03767 707 SUPERFAMILY Protein kinase-like (PK-like) 16 316 IPR011009 -
Pumo5g03767 707 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03767 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Pumo5g03767 707 MobiDBLite consensus disorder prediction 539 564 - -
Pumo5g03767 707 Pfam Protein kinase domain 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03767 707 MobiDBLite consensus disorder prediction 380 427 - -
Pumo5g03767 707 MobiDBLite consensus disorder prediction 547 564 - -
Pumo5g03767 707 FunFam Serine/threonine-protein kinase Nek2 16 98 - -
Pumo5g03767 707 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03767 Pumo-Chr5 87612822 87621730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03767 25 310 MAP Kinase Kinase Kinase AT1G53570 30.519 5.91e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pumo5g03767 Pkinase 6.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03767 K08857 - gmx:100796019 1158.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03767 5 87612822 87621730 Pumo5g03767 5 87612822 87621730 ECH
Pumo5g03767 5 87612822 87621730 Pumo3g01882 3 29895466 29902572 PCT