Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03766 ATGTTCGATGGAGCACCAGACCAGTTCCAACAATTCATAGCACCAAGGACCACTCTTCCTCTCCACCATGCCTCTTCAACTCCCCCAAATACCTTCCTACCCTTTGATCCATATAACCCTTCTCAATCTCATCATCACTTGCCACTCCATACCAATCTCTTGCACCCATTGCACCCCCCTACTACTACTACTACTTCTCCCACCCACAAACATCAACAAGACAACAAGGTTGCTCCAATCAACAACGCCCACATTCAAAGAGATCAAAGACAATTACCAGATCAGCTAACCGATTCCTGGACCAACGATGAAGTGCTTGCACTTTTGAGAATCAGATCTAGCATGGAATATTGGTTCCCAGACCTCACATGGGACCATGTCTCAAGGAAGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAAGAGAAGTTCGAAGATGAGAGTAGATATTTCGACAACATTAACAACTACGGCAAGAACAATTACCGGTTCCTCAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATCTAGGTGGTGGTGGTGATAATGGGGTTGTAGTGAGGAGTGAAAAGACTCTCCACCTAGGAGGAGACAACATGGGCCACCACGCATTGGAGGAAAATTCGAGAGACATTGAAGAAGCAACAGGGACCAAACAATGTGATAATAATATTGGAAGTGACATAGTGGTGGAAAAGTCAAAGGTGCGCAAGAGGAAGAGGCGTGACAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTGTTGTCAACAAGATGATGGCTCAGCAAGAAGAGATTCACAACAAGCTCCTCGAGGACATGGTCAAAAGGGACCAAGAGAAGTTCGCCAGAGAGGAAGCGTGGAAGAAGCAAGAGATGGATCGGATGAACAAGGAGCTTGAGATTATGGCACAAGAGCAAGCTATTGCCGGGGATAGACATGCCACCATAATTGAATTCTTAAAGAAATGTGCAGCAACAACAACTACTTCATTTTCCCCTCCAAGCCAAAATGCCAAGTACTACGCAACAAATGGTTCAAATCTTCCAAATTGTGCATTGCACTCGCAAAACCCTAATAATCCTTCCAATGAAGACATCAATCTTGAGCCGACACCTTCTCCCAAAATGATTCAAAATCATGATCAAACTAAGTTGGGAGCAGAAAACCCTAGCACATGTGACACATTATTACAAGTTCCTTCTTCCTCCAACTCTTCCCCAACACCCCACAACCCTAGTTCTTCACTCAATAGCCATAATAATATTATCCCATTAGAGTCAAATTCGGTTTCCACATATAAGGCCACCTCAACAACCCCTATTGCCACCAGTGAGAACTCGAAAGAAGATGTTGGGAGAAGATGGCCAAGAGATGAAGTGTTAGCACTGATAAACCTGAGGTGCACAAGTCTAAGTAACAACAACAACAATGAAGAGAAAGAAGGAAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGCTGGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAATAAGAAAAGGTCCCTTAACTCTAGGACCTGTCCTTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATCGTGCCACAGTCTGAAAGGGAAGGGAACTACTTGAATCCAACCGCGAATTCCGGTCAAGTGCCACTACCGGATCATGATCAAGTCCAAGCTGAAGAGTCTTCTCAAGTGGGGTCTGCTGGTTTGGTTCAATATGCATGTTGA 1803 0.447 MFDGAPDQFQQFIAPRTTLPLHHASSTPPNTFLPFDPYNPSQSHHHLPLHTNLLHPLHPPTTTTTSPTHKHQQDNKVAPINNAHIQRDQRQLPDQLTDSWTNDEVLALLRIRSSMEYWFPDLTWDHVSRKLAELGFKKSAEKCKEKFEDESRYFDNINNYGKNNYRFLSELEELCQNPDLGGGGDNGVVVRSEKTLHLGGDNMGHHALEENSRDIEEATGTKQCDNNIGSDIVVEKSKVRKRKRRDRFEMFKGFCESVVNKMMAQQEEIHNKLLEDMVKRDQEKFAREEAWKKQEMDRMNKELEIMAQEQAIAGDRHATIIEFLKKCAATTTTSFSPPSQNAKYYATNGSNLPNCALHSQNPNNPSNEDINLEPTPSPKMIQNHDQTKLGAENPSTCDTLLQVPSSSNSSPTPHNPSSSLNSHNNIIPLESNSVSTYKATSTTPIATSENSKEDVGRRWPRDEVLALINLRCTSLSNNNNNEEKEGNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSEREGNYLNPTANSGQVPLPDHDQVQAEESSQVGSAGLVQYAC 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03766 600 CDD GT1 457 526 - -
Pumo5g03766 600 FunFam Trihelix transcription factor GTL2 459 524 - -
Pumo5g03766 600 ProSiteProfiles Myb-like domain profile. 458 519 IPR001005 -
Pumo5g03766 600 PANTHER FI21293P1 65 590 - -
Pumo5g03766 600 ProSiteProfiles Myb-like domain profile. 92 151 IPR001005 -
Pumo5g03766 600 MobiDBLite consensus disorder prediction 353 450 - -
Pumo5g03766 600 Gene3D - 100 156 - -
Pumo5g03766 600 Gene3D - 459 524 - -
Pumo5g03766 600 MobiDBLite consensus disorder prediction 353 457 - -
Pumo5g03766 600 Pfam Myb/SANT-like DNA-binding domain 98 164 IPR044822 -
Pumo5g03766 600 Pfam Myb/SANT-like DNA-binding domain 457 545 IPR044822 -
Pumo5g03766 600 FunFam Trihelix transcription factor GT-2 100 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03766 Pumo-Chr5 87604074 87607599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03766 100 551 Trihelix Transcription Factor Family AT5G28300 41.865 2.31e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo5g03766 Myb_DNA-bind_4 1.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03766 - - gmx:100801868 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03766 5 87604074 87607599 Pumo5g03766 5 87604074 87607599 ECH
Pumo5g03766 5 87604074 87607599 Pumo3g01883 3 29916921 29921311 PCT