Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03757 ATGAATGAGCTTGAAACAGATTCCTCTGCATCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATACGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAATCAGGTTAAATTGTATGATTTTCTGCAGAGCCCTGAAGATCTCGAGAGGCTTTACTGTGAAATTCATCTCCTCAAGACGTTGAAGCACAGAAACATCATGAAATTTTACACATCTTGGGTCGATACTGCAAACAGAAATATAAACTTTGTGACTGAAATGTTCACTTCTGGTACCCTTAGACAGTATAGGCAAAAGCACAAGAGAGTTAACATTAGGGCAGTGAAGCATTGGTGTAGACAGATCCTGAGAGGGCTTCTCTATCTTCATAGCCATGATCCACCTGTGATCCATAGAGATCTTAAATGTGATAATATTTTTGTCAATGGAAACCAAGGGGAAGTTAAGATTGGGGATCTTGGGTTGGCAGCAATTCTCCGCAAGTCCCATGCTGCTCATTGTGTAGGAACACCCGAGTTCATGGCACCAGAAGTTTATGAAGAGTCGTATAACGAATTAGTTGACATATATTCCTTTGGGATGTGTGTATTAGAAATGGTCACATTTGAATATCCTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCAGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCCTGGCAACAGTGTCTCTAAGGCTCTCTGCTAGGGAGCTTCTAGATGATCCTTTTCTTCAGATTGATGATTATGAGTATGATTTGGGACTGGTGGACAGTGGAGCATTTGATGACTTGGGTCCTCTTACCCATCAGCCATTCTTTGATCTCCACCGGAGCTATAGTAACATGAGTACAGATTACTCAAATGGCTTTGAATATGAAGGAGACTGGTATTCTCATCCAGCTGAGATTGAACCTAGTGGAATCGAACTTTTTGAGTGCCATGATGATGAAGCCTCTGAAGATGTTGACATAAGCATCAGAGGCAAGAGGAAAGATGACGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGGCCATATTCGAAATATCTATTTCCCATTTGACATAGAGACAGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGATGTTACCAGTATAGCAGATATGATAGATGGGGAAATTGCTGCCTTGGTACCTGAATGGAAGCCAGGACCAGGATTTGAAGAAACTAACCATTATGTAAATAAATTTTTTTGTCACAATTGTGTGTCTAATCATACTTCTGGTGGCAATGTGATGGATTTTCTTTCACATAATCAAGATGGAAAGAACTCGCAGCTTCCTCAATGCTGTAGGCATGGATGTACTTCAATGCATGGGCGTTTCGAGGAGATTACCTTCCCATCTGAGTGTGACAATCATGTTCGAGGGGACGCACCTATTGAATCAAGCCAATCAGACTGCTTGCAGTATCAGGAGTCATGGAATCATCATGAAAGTTGTGAACTGAGTCCAGTAGAGTCTGATCAAAGCCATTCCGACGAGCAATATGAACAATTTGATAGATCGGTATTAGCAGAAGACAAAGGAAAGGGTGTTTGGGAAAACAAGTTTGCACATGATCCAGGAAACCCCCCACGAAGTTTATCAGGAAATTATTTCTCTGCTATCCGTTTATTATGTTGTGGCCCTGAGATTGAATATGAGAAAGAGGTTCAACAAGAAATGAGATGGATCAAAGCAAAACACCAAATGGAGTCAAGGGAACTTAGGAATAAACGGTTTGGTATAGCAGCTAAATCTTCACATACAGTAAACGGAGTGGGCCATGGGATTCACTTGAAACCCTTAGGTAATTTCTGGAATTATGATCCCAGTTGGCATTCTCAAGTCCAAAAGAACCCCAATTTGGACACCCAAAGGCCCCAAAATTGTGAGGTGATGCGTTCTCACAAAGAAGGTAAGGTTACTGCAAAGAGTTTTTACACAGGGTCGTTTCGAGACACTCTACACAGGACAGTTTCCCTTCCCGTTGATGCTGTGGATTTATAA 2154 0.4132 MNELETDSSASEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLGLVDSGAFDDLGPLTHQPFFDLHRSYSNMSTDYSNGFEYEGDWYSHPAEIEPSGIELFECHDDEASEDVDISIRGKRKDDGGIFLRLRIADKEGHIRNIYFPFDIETDTALSVATEMVAELDITDQDVTSIADMIDGEIAALVPEWKPGPGFEETNHYVNKFFCHNCVSNHTSGGNVMDFLSHNQDGKNSQLPQCCRHGCTSMHGRFEEITFPSECDNHVRGDAPIESSQSDCLQYQESWNHHESCELSPVESDQSHSDEQYEQFDRSVLAEDKGKGVWENKFAHDPGNPPRSLSGNYFSAIRLLCCGPEIEYEKEVQQEMRWIKAKHQMESRELRNKRFGIAAKSSHTVNGVGHGIHLKPLGNFWNYDPSWHSQVQKNPNLDTQRPQNCEVMRSHKEGKVTAKSFYTGSFRDTLHRTVSLPVDAVDL 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03757 717 FunFam probable serine/threonine-protein kinase WNK9 106 285 - -
Pumo5g03757 717 CDD STKc_WNK 21 280 - -
Pumo5g03757 717 Gene3D Phosphorylase Kinase; domain 1 7 104 - -
Pumo5g03757 717 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 373 427 IPR024678 GO:0004674|GO:0005524
Pumo5g03757 717 FunFam probable serine/threonine-protein kinase WNK9 370 453 - -
Pumo5g03757 717 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03757 717 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 631 - -
Pumo5g03757 717 FunFam Probable serine/threonine-protein kinase WNK1 7 104 - -
Pumo5g03757 717 SMART serkin_6 23 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03757 717 SUPERFAMILY Protein kinase-like (PK-like) 26 281 IPR011009 -
Pumo5g03757 717 Gene3D Transferase(Phosphotransferase) domain 1 106 285 - -
Pumo5g03757 717 ProSiteProfiles Protein kinase domain profile. 23 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03757 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Pumo5g03757 717 Gene3D - 370 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03757 Pumo-Chr5 87517447 87520805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03757 11 499 MAP Kinase Kinase Kinase AT3G22420 57.944 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Pumo5g03757 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03757 K08867 - gmx:100790554 1365.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03757 5 87517447 87520805 Pumo5g03757 5 87517447 87520805 ECH
Pumo5g03757 5 87517447 87520805 Pumo3g01892 3 30010905 30011909 PCT