Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo5g03755 | ATGGCGGATAAGGCTGTGACAATCCGAACCCGGAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAATTTGTCGTTGATGTTCTTCATCCAGGAAGAGCAAATGTTTCCAAGGCTGAACTTAAGGAGAAGTTGGCTAGAATGTATGAAGTGAAAGACCCAAATACTGTATTTGTCTTCAAATTCCGAACCCATTTTGGAGGTGGAAAATCCACTGGATTTGGTTTGATTTATGATACAGTGGAAAATGCCAAGAAGTATGAGCCCAAGTACAGGCTTATCAGGAACGGCCTTGACACTAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGACCAAGGCCTCTGATGCTGCCAAGGCTGGAAAAAAGAAATAA | 414 | 0.4227 | MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK | 137 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo5g03755 | 137 | PANTHER | 40S RIBOSOMAL PROTEIN S24 | 1 | 131 | IPR001976 | GO:0003735|GO:0005840|GO:0006412 | |
| Pumo5g03755 | 137 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 6 | 108 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
| Pumo5g03755 | 137 | Gene3D | - | 1 | 132 | - | - | |
| Pumo5g03755 | 137 | ProSitePatterns | Ribosomal protein S24e signature. | 66 | 88 | IPR018098 | - | |
| Pumo5g03755 | 137 | Hamap | 30S ribosomal protein S24e [rps24e]. | 4 | 106 | IPR001976 | GO:0003735|GO:0005840|GO:0006412 | |
| Pumo5g03755 | 137 | FunFam | 40S ribosomal protein S24 | 1 | 137 | - | - | |
| Pumo5g03755 | 137 | Pfam | Ribosomal protein S24e | 25 | 103 | IPR001976 | GO:0003735|GO:0005840|GO:0006412 | |
| Pumo5g03755 | 137 | MobiDBLite | consensus disorder prediction | 102 | 137 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo5g03755 | Pumo-Chr5 | 87487849 | 87490005 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo5g03755 | 1 | 132 | Cytoplasmic Ribosomal Protein Gene Family | AT5G28060 | 88.636 | 7.53e-86 | 245 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo5g03755 | K02974 | - | gmx:100802918 | 244.202 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo5g03755 | 5 | 87487849 | 87490005 | Pumo5g03755 | 5 | 87487849 | 87490005 | ECH | |
| Pumo5g03755 | 5 | 87487849 | 87490005 | Pumo3g01893 | 3 | 30016399 | 30018537 | PCT |