Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03754 ATGGCTTCTCAGCAACACGACGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAATCTCAGGAGGACGAAGAGTACGAAGAAGACGACGACGTTTTGGCCGACGACGAAGAAAACGACCCCCCTCCCTCCGCCGCTCTCGCCGTCACCGTCGCCGTCCCCGGTTCCGCCCTCTCCAACGGCGGCGCCGCTCCAATTTCGACGCCCACCGCCACCACCATCGTCGTCAGCGACTCCTCCGATCCGAAGCGGCGGCGCGTGGAGCAAATCGAGGAGAAGAAGCCGCCGCCGCCGCTGGACGACTCGCGGCGGCTGTTTCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCTTGCAAGGGTTCCTCGACTACACCTCGCAGCGAGGATCCTCGCACCACAACGACACCGCTTTGTTCTACGACCAAATCAAGTCGAAGCTCCAACTCGATTTCAACAAGAACCAGCTCGTCGAGAAGATCCGAAGGTTGAAGAAGAAGTACCGAAACGTCCTCAACAAGATAGGCTCCGGCAAGGAATTTTCCTTCAAGAGCGCTCACGATCAAGCCACCTTCGAAATCTCGCGCAAGATCTGGAGCAACGTGGCTCCAATCGGCGACAATTCCTTGGACGACGACGAAATCAACCCTAGCCCCAACCCTAACCCTAACCTTAATTTTAGCCCCGTAATTCTTAAGAATGAAATGATTTTCAGGAATTCCGCGGAGAAGAAAACACCGAAACGATCTCGGCCTCGATCGGCGGTGAAAATCGAGTCAAATGACGGATCCGCGTCAAACAGAGATCATAATTGTATTAGCAATGCTACAACTACTGTTACACCTACTGCTACCGCTACCGCTACTAACACTACTACTCCTGCAGCTACTACTAATAATAATTGTAACAGTGGTTATAGCAATAACATACCGAGTTTGATTGAGGAGACGGTGAGGAGTTGTTTGTCGCCGGTGTTGAAGGAGTTGATGGCTGGGGCCATGGGAGGAGGAGGAGGAGCGTTTGGAGCGAGAGGGTTTTCGTTGAACTTGAATCCTATGCCTTTTATGAATTTGAGTTTTGGCGGTGGGGAAATGGTGGATGAGAAATGGAGGAAGCAACAGATATTGGAGTTGGAAGTGTACTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCAGCTATGGAGGAGTTGCGGTCAAATGGAGGAGGAGGTTGA 1227 0.5322 MASQQHDAVFREEDMDDDDDESQEDEEYEEDDDVLADDEENDPPPSAALAVTVAVPGSALSNGGAAPISTPTATTIVVSDSSDPKRRRVEQIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSNVAPIGDNSLDDDEINPSPNPNPNLNFSPVILKNEMIFRNSAEKKTPKRSRPRSAVKIESNDGSASNRDHNCISNATTTVTPTATATATNTTTPAATTNNNCNSGYSNNIPSLIEETVRSCLSPVLKELMAGAMGGGGGAFGARGFSLNLNPMPFMNLSFGGGEMVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSNGGGG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03754 408 MobiDBLite consensus disorder prediction 12 40 - -
Pumo5g03754 408 MobiDBLite consensus disorder prediction 259 276 - -
Pumo5g03754 408 MobiDBLite consensus disorder prediction 243 276 - -
Pumo5g03754 408 Coils Coil 380 404 - -
Pumo5g03754 408 MobiDBLite consensus disorder prediction 243 258 - -
Pumo5g03754 408 MobiDBLite consensus disorder prediction 81 104 - -
Pumo5g03754 408 Coils Coil 156 176 - -
Pumo5g03754 408 Pfam Protein of unknown function, DUF573 108 202 IPR007592 GO:0006355
Pumo5g03754 408 PANTHER BNAANNG10740D PROTEIN-RELATED 3 400 IPR007592 GO:0006355
Pumo5g03754 408 MobiDBLite consensus disorder prediction 1 104 - -
Pumo5g03754 408 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03754 Pumo-Chr5 87478244 87480121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03754 46 408 GeBP Transcription Factor Family AT5G28040 47.644 8.59e-95 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Pumo5g03754 DUF573 1.6e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03754 - - gmx:100779712 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03754 5 87478244 87480121 Pumo3g01896 3 30036311 30037447 PCT