LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g03726	ATGGGGTGTGTGATTAGCAGGGAAGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGGTGAGACTAAGAGGAAGGTTGATGGAGTGTCAGGGAGCAAGGGTGAGGTGGTAGAGGTTCAGAATGGTGAGAAGGAGAAGGAGAAGGATAAGGGCGGTGAAGGAGTGCAGCGGCCTCGGGGTGAAAGGAGGAGATCGAAGGCAAATCCGAGGCTGAGCAATCCGCCGAAGCATTTGAGGGGGGAGCAGGTTGCAGCTGGGTGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCGCGAAAGGCTGACACCTTTGACAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACAATGACAGGTAAAATTGTTGCCCTAAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCAAGAGAGATTCTTATTTTGCGAAGGTTGGATCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTTCTATCAGGACTTGAGCACTGTCATAACCGTCATGTGCTTCACCGCGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCAGACTTTGGACTGGCTTCTACTTTTGATCCAAACCATAAGCATCCCATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAATTGCTTCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTCTGGAGTGCCGGATGTATTTTAGGAGAGTTATTGGCTGGGAAGCCAATCATGCCTGGTCGTACAGAGGTGGAACAACTGCACAAGATATACAAACTATGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTATTTAAACCACGAGAGCCATACAAGAGACGTATAAGAGAGACATTTAAAGATTTTCCACCTTCTGCTCTACCTCTCATCGATACACTTCTTGCAATTGATCCTGTAGAACGGAAAACTGCCTCAGATGCTTTAAGAAGTGAGTTCTTTACTACAGAACCTTATGCTTGCGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGACGGGATGATGAAATGAGGAGACTAAGAGCTGCAGGCAAAGCTCAGGTTGATGGTCCAAAGAAGCATCGTACACGTGATCGTGCTGCAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGTTTTCCTTTGGGATCTTCACATCACATTGATCCAGATACTGTTCCTACCGATGTCTCTTTTACGTCAACCTCTTATACCTATTCAAAGGAACCGTTCCAAGCTTGGTCTGGTCCCATTGGTAATGCTGCTGACATTGGAGTGCCAAAGCGGAAGAAACACACTACAGGTGATGCATTGGATTTATCAAAACCACAGAAAGATGCCCTAAAAGACAAGGTTAAAGGAAAGAAAGTCATAGCTTAG	1734	0.4504	MGCVISREVSKGIISEVKEEKGLSGETKRKVDGVSGSKGEVVEVQNGEKEKEKDKGGEGVQRPRGERRRSKANPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFDKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGTLKIADFGLASTFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRIRETFKDFPPSALPLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRAAGKAQVDGPKKHRTRDRAAKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHTTGDALDLSKPQKDALKDKVKGKKVIA	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g03726	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	235	247	IPR008271	GO:0004672\|GO:0006468
	Pumo5g03726	577	SMART	serkin_6	115	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo5g03726	577	ProSitePatterns	Protein kinases ATP-binding region signature.	121	144	IPR017441	GO:0005524
	Pumo5g03726	577	CDD	STKc_CDK9_like	115	399	-	-
	Pumo5g03726	577	Pfam	Protein kinase domain	116	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo5g03726	577	PANTHER	CELL DIVISION PROTEIN KINASE	113	403	-	-
	Pumo5g03726	577	Gene3D	Transferase(Phosphotransferase) domain 1	198	438	-	-
	Pumo5g03726	577	MobiDBLite	consensus disorder prediction	543	577	-	-
	Pumo5g03726	577	MobiDBLite	consensus disorder prediction	434	453	-	-
	Pumo5g03726	577	MobiDBLite	consensus disorder prediction	43	73	-	-
	Pumo5g03726	577	MobiDBLite	consensus disorder prediction	528	577	-	-
	Pumo5g03726	577	FunFam	probable serine/threonine-protein kinase At1g54610	102	197	-	-
	Pumo5g03726	577	Gene3D	Phosphorylase Kinase; domain 1	102	197	-	-
	Pumo5g03726	577	MobiDBLite	consensus disorder prediction	18	86	-	-
	Pumo5g03726	577	ProSiteProfiles	Protein kinase domain profile.	115	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo5g03726	577	FunFam	probable serine/threonine-protein kinase At1g54610	198	439	-	-
	Pumo5g03726	577	MobiDBLite	consensus disorder prediction	18	36	-	-
	Pumo5g03726	577	SUPERFAMILY	Protein kinase-like (PK-like)	110	406	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g03726	Pumo-Chr5	86923629	86928520	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g03726	107	439	Core Cell Cycle Gene Families	AT5G10270	52.436	8.01e-124	372

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pumo5g03726		Pkinase	2.9e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g03726	K08819		-	gmx:100786837	1093.57