Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03706 ATGTTTGTGACTCTTATTTCTTCCATTCATCTGCTTCTTCGTATCATAGTCAGCAGGAATCATGAACAAGACCACAGTAAAGGGGAATTGATGTTTTCTATTGCTAATGTTTGTGATTACAGGTGTCATGCAGGGACAGTGAAGAGAAAGTCCTGCAAACAGATCAAAGATGGCCCAATTGACCATGCTTTCAATGACATGCACAAAAAACGAGGCATTGTGTTTACTTGCCCTGCTTCTGTTTCTGCCCAAGACTTGGGAGAATTCGATTTGGAGAAAGAGGAAAGTGTGGTAACTCTAAGAGAACTCTTAGAAGACTGCATTAGAGACACTGACAACTCTTATCAACCACCTGAATTGGCTGTTAGTTGTCCAAGCTTAAGGACACGTTCCAGAACTTTGGTGAATTTCAGTCTCTCTGACCTGAGAAATGCAACCAACAATTTTAGCAATGGTTTGAAGTCTAGCCCTGAGAATATAATTGGAAGAGGTGGCTATGCTGATGTTTACAAGGGTAGCCTCCAAGATGGGCAACTAATAGCAGTTAAACGACTGAATAAAGGGACTCCAGAAAACAGAACATCAAGCTTTCTATCTGAGCTAGGCATTCTTGCTCATGTTGATCATCCTAATACTGCCAAGCTTATTGGGTGTGGAGTAGAAGGAGGAATGCACCTTGTCTTCCAACTATCTCCACTGGGAAATTTAGGGTCTCTTCTTCATGGTCCAAATAAAAATAAATTAGATTGGAGTAAAAGGTATAAAATTGTTATGGGGATAGCGGATGGCCTTCTTTATCTTCATGAGATTTGTCATAGGCGAATCATCCATAGAGACATTAAAGCAGAGAATATTCTGCTCACAGAGAATTTTGAGGCACAGATTTGTGATTTTGGGCTTGCAAAATGGTTACCAGAACCGTGTACTCACCATAATGTATCAAAATTTGAAGGCACAATGGGGTATTTTGCTCCTGAATATTTGATGCATGGCATAGTAAGCGAGAAAACTGATATTTATTCCTTTGGGGTCTTGCTTTTGGAGATTATAACTGGGCGTCATGCTTTGGATCATTTGCAACAAAGTATTGTGTTATGGGCAAAGCCTTTATTTGAAGCTAATAATATTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACCGGGAACAAATGGATCGTGTTGTTTTGACTGCATCTCTGTGTGTTGAGCAGTATCCTATCTTACGCCCCAGCATGAGTCAGGCAAAATCTTCACCTTTAAAGAGAAGATGGATCACATTTTCTCTGTTGGATGCAGGTTGCAATACTGGTAAGAGGTGA 1326 0.4035 MFVTLISSIHLLLRIIVSRNHEQDHSKGELMFSIANVCDYRCHAGTVKRKSCKQIKDGPIDHAFNDMHKKRGIVFTCPASVSAQDLGEFDLEKEESVVTLRELLEDCIRDTDNSYQPPELAVSCPSLRTRSRTLVNFSLSDLRNATNNFSNGLKSSPENIIGRGGYADVYKGSLQDGQLIAVKRLNKGTPENRTSSFLSELGILAHVDHPNTAKLIGCGVEGGMHLVFQLSPLGNLGSLLHGPNKNKLDWSKRYKIVMGIADGLLYLHEICHRRIIHRDIKAENILLTENFEAQICDFGLAKWLPEPCTHHNVSKFEGTMGYFAPEYLMHGIVSEKTDIYSFGVLLLEIITGRHALDHLQQSIVLWAKPLFEANNIKDLVDPSLGDDYDREQMDRVVLTASLCVEQYPILRPSMSQAKSSPLKRRWITFSLLDAGCNTGKR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03706 441 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 232 423 - -
Pumo5g03706 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Pumo5g03706 441 SMART serkin_6 155 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03706 441 Pfam Protein tyrosine and serine/threonine kinase 159 364 IPR001245 GO:0004672|GO:0006468
Pumo5g03706 441 ProSiteProfiles Protein kinase domain profile. 155 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03706 441 Gene3D Transferase(Phosphotransferase) domain 1 232 425 - -
Pumo5g03706 441 PANTHER OS08G0249100 PROTEIN 105 417 IPR046958 -
Pumo5g03706 441 SUPERFAMILY Protein kinase-like (PK-like) 136 426 IPR011009 -
Pumo5g03706 441 Gene3D Phosphorylase Kinase; domain 1 119 229 - -
Pumo5g03706 441 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Pumo5g03706 441 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 125 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03706 Pumo-Chr5 86704819 86708656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03706 134 417 Receptor kinase-like Gene Family AT1G53420 43.197 3.85e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo5g03706 PK_Tyr_Ser-Thr 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03706 - - gmx:113001177 638.262