Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03702 ATGTCGAGGAGAAAGGTTAGAGAGCCAAAGGAAGAAAACGTGACTCTGGGTCCAGCTGTTAGAGATGGCGAACATGTCTTTGGCGTTGCTCGCATCTTTGCTTCCTTCAATGATACCTTCATTCATGTTACTGATTTGTCTGGGAGGGAAACACTTGTCCGCATCACTGGCGGGATGAAGGTTAAAGCTGACAGAGATGAATCATCTCCATATGCTGCTATGCTTGCTGCGCAGGATGTTGCTGCCAGATGCAAGGAACTGGGCATAACTGCTCTTCATATCAAGCTCCGTGCCACTGGTGGTAACAAGACAAAGACACCTGGTCCTGGTGCTCAATCAGCTCTTAGAGCCCTTGCTCGTTCAGGAATGAAAATTGGTCGCATAGGTATCTGCCTTTTTAAGAAAAACATAGTTCAATTTTTGTTGTCTCTTACTCAAATGCCTTGTTATTGTCCTTTTTTTTGTGTTGTTTACGTCCTTTTCTTTGCCTCTTGCACATTAATAATGTGTTGTTTATCTGCGTTTTTCACTCTGAAGGGTTGTTTCTTTTTCTTTCTATATTCATTGTATTTCCTCGTTTTGTTTTCTGATTGA 594 0.4226 MSRRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIGICLFKKNIVQFLLSLTQMPCYCPFFCVVYVLFFASCTLIMCCLSAFFTLKGCFFFFLYSLYFLVLFSD 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03702 197 Hamap 30S ribosomal protein S11 [rpsK]. 3 157 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo5g03702 197 Gene3D Ribosomal protein S11 1 129 IPR036967 GO:0003735|GO:0005840|GO:0006412
Pumo5g03702 197 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 3 128 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo5g03702 197 Pfam Ribosomal protein S11 28 128 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo5g03702 197 FunFam 40S ribosomal protein S14 1 132 - -
Pumo5g03702 197 SUPERFAMILY Translational machinery components 24 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03702 Pumo-Chr5 86617891 86640747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03702 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 90.625 2.59e-84 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03702 K02955 - gmx:100787077 246.128