Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g03686 | ATGTGTTTGCCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTGTATCCCCAACCACAAGACCCGTTTGGCTATGGAATCAAAGACCCTTACAACTACAGCAGCTTGTTAGAAGGTGGTGGAGGAAACTGGGGCTATGAAGACCAAACTTGTGTCACTTTTCTGGAGAACCAAACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTCCATCATCCATGTTGCCTCACTTGAATGCATCAAATCCTCAATCTTCGGAAACCAGCAACACACAGAACAACAACTTAGATACTTCAATTTCCACCCCTGCTCGTCCCAAAAGGCGCCGAACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGACTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATAAACTTTGTTAAGGAGCTTGAGCAGAGGTTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAGAAAGAGGGGAAATCTGATGTGCCCTTTTCTGAGTTCTTCTCCTTTCCGCAGTACTCAACAAGTGCCAGTGGTGGCTGTGAGAATTCTACAGCCATGAGTGAGCAAAAGGGTGAGGCTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTTGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTCTCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACAGGGGAAATTGTCCTCTATTCTCTCAGTGTTAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCTGCTGTATACCAAATGCTGGATAAGATTCAACAAGAGTCAATCTTGAATTAA | 966 | 0.4451 | MCLPEGERGMALEAVVYPQPQDPFGYGIKDPYNYSSLLEGGGGNWGYEDQTCVTFLENQTENYPYGEWNCSPPSSMLPHLNASNPQSSETSNTQNNNLDTSISTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNDYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEKEGKSDVPFSEFFSFPQYSTSASGGCENSTAMSEQKGEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQMLDKIQQESILN | 321 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g03686 | 321 | Gene3D | - | 114 | 191 | IPR036638 | GO:0046983 | |
Pumo5g03686 | 321 | Coils | Coil | 172 | 192 | - | - | |
Pumo5g03686 | 321 | CDD | bHLH_AtFAMA_like | 127 | 200 | - | - | |
Pumo5g03686 | 321 | MobiDBLite | consensus disorder prediction | 76 | 125 | - | - | |
Pumo5g03686 | 321 | MobiDBLite | consensus disorder prediction | 76 | 104 | - | - | |
Pumo5g03686 | 321 | Pfam | Helix-loop-helix DNA-binding domain | 125 | 176 | IPR011598 | GO:0046983 | |
Pumo5g03686 | 321 | SMART | finulus | 130 | 181 | IPR011598 | GO:0046983 | |
Pumo5g03686 | 321 | PANTHER | MAX DIMERIZATION, MAD | 64 | 317 | - | - | |
Pumo5g03686 | 321 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 124 | 188 | IPR036638 | GO:0046983 | |
Pumo5g03686 | 321 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 124 | 175 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g03686 | Pumo-Chr5 | 86394496 | 86396651 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g03686 | 10 | 291 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G72210 | 47.152 | 2.86e-73 | 227 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pumo5g03686 | HLH | 3.9e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g03686 | - | - | gmx:100782243 | 570.852 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo5g03686 | 5 | 86394496 | 86396651 | Pumo5g03686 | 5 | 86394496 | 86396651 | ECH | |
Pumo5g03686 | 5 | 86394496 | 86396651 | Pumo3g01940 | 3 | 30514048 | 30515884 | PCT |