Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03686 ATGTGTTTGCCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTGTATCCCCAACCACAAGACCCGTTTGGCTATGGAATCAAAGACCCTTACAACTACAGCAGCTTGTTAGAAGGTGGTGGAGGAAACTGGGGCTATGAAGACCAAACTTGTGTCACTTTTCTGGAGAACCAAACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTCCATCATCCATGTTGCCTCACTTGAATGCATCAAATCCTCAATCTTCGGAAACCAGCAACACACAGAACAACAACTTAGATACTTCAATTTCCACCCCTGCTCGTCCCAAAAGGCGCCGAACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGACTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATAAACTTTGTTAAGGAGCTTGAGCAGAGGTTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAGAAAGAGGGGAAATCTGATGTGCCCTTTTCTGAGTTCTTCTCCTTTCCGCAGTACTCAACAAGTGCCAGTGGTGGCTGTGAGAATTCTACAGCCATGAGTGAGCAAAAGGGTGAGGCTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTTGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTCTCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACAGGGGAAATTGTCCTCTATTCTCTCAGTGTTAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCTGCTGTATACCAAATGCTGGATAAGATTCAACAAGAGTCAATCTTGAATTAA 966 0.4451 MCLPEGERGMALEAVVYPQPQDPFGYGIKDPYNYSSLLEGGGGNWGYEDQTCVTFLENQTENYPYGEWNCSPPSSMLPHLNASNPQSSETSNTQNNNLDTSISTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNDYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEKEGKSDVPFSEFFSFPQYSTSASGGCENSTAMSEQKGEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQMLDKIQQESILN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03686 321 Gene3D - 114 191 IPR036638 GO:0046983
Pumo5g03686 321 Coils Coil 172 192 - -
Pumo5g03686 321 CDD bHLH_AtFAMA_like 127 200 - -
Pumo5g03686 321 MobiDBLite consensus disorder prediction 76 125 - -
Pumo5g03686 321 MobiDBLite consensus disorder prediction 76 104 - -
Pumo5g03686 321 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983
Pumo5g03686 321 SMART finulus 130 181 IPR011598 GO:0046983
Pumo5g03686 321 PANTHER MAX DIMERIZATION, MAD 64 317 - -
Pumo5g03686 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 188 IPR036638 GO:0046983
Pumo5g03686 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03686 Pumo-Chr5 86394496 86396651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03686 10 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.152 2.86e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g03686 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03686 - - gmx:100782243 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03686 5 86394496 86396651 Pumo5g03686 5 86394496 86396651 ECH
Pumo5g03686 5 86394496 86396651 Pumo3g01940 3 30514048 30515884 PCT