Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03685 ATGAAAAAACATACAGCGTTATTCCTCCTCCTCCTCGTGTCACCGCTAATCCCTATCGCCGTCGTGCAGGCCCAGGCCCAGGCCCAGCCCAATGACTACTCCGACCCAAACCTCAACCAGTTCAGCCCCTCCATAGCCATAATCATAATCATATTAGTCGCCGCGCTTTTTCTCATGGGCTTTTTCTCCATCTACATACGCCACTGCGCCGATTCCCCACCCAACTCCGTTAGGCCTCTCACAAACGCACGCTCCAGGAGAGCCGCGCGTGGCCTCGACCCTGCGGTCATTCAAACATTTCCAATCCTCGAATACTCCGAGGTCAAGATCCACAAAATCGGAAAAGAAGCGTTGGAATGCGCGGTCTGCCTTTGCGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAATGCGACCACGTTTTCCACCCCGAGTGCATCGACGAGTGGCTCAGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTCCCCACCGAGTCCGAGGATGCTAACGCTAACGCCAACGGCGTTGTTCCACCAGTTCCGGAAACGTTAACGCGAGACATCGAAGCACAAAACGACGCCGTGGAAGCCGCGCAAGAGCAGCAAAACGCGGACGCTGACCGAGTCTTGCCTGAACCCGAAGTTATTTCCCTGGACAAAACGCTGAACAGGAACCGCACGCGAGGGTCGCGGTCGAACCGGCCGCGCTGGTTTTCGAGGTCGCACTCGACTGGACACTCGCTGGTCCAACCGGGAGAAAACACTGACCGGTTCACTTTGAGGTTGCCTTTGGAGGTGAGGAAGCAATTAATAAACCGGCAATTGCAACGTGCGAGTAGCTTGATCGTGTTACCTAGAGAAAGTAGTTCGAGGCAGGATTACCGAACCGGAGGAGAAGGGAGTAGTAGGGGGAAGATTTCGAGGCGGTTGGACCGGAGTTTGAAATCAGGACCGGTGGATTTTCACGATGGCTGCGCCCTTTTTTGCGAGGGCGTTGTCTATTAG 1017 0.5575 MKKHTALFLLLLVSPLIPIAVVQAQAQAQPNDYSDPNLNQFSPSIAIIIIILVAALFLMGFFSIYIRHCADSPPNSVRPLTNARSRRAARGLDPAVIQTFPILEYSEVKIHKIGKEALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPTESEDANANANGVVPPVPETLTRDIEAQNDAVEAAQEQQNADADRVLPEPEVISLDKTLNRNRTRGSRSNRPRWFSRSHSTGHSLVQPGENTDRFTLRLPLEVRKQLINRQLQRASSLIVLPRESSSRQDYRTGGEGSSRGKISRRLDRSLKSGPVDFHDGCALFCEGVVY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03685 338 SMART ring_2 120 161 IPR001841 -
Pumo5g03685 338 MobiDBLite consensus disorder prediction 291 314 - -
Pumo5g03685 338 SUPERFAMILY RING/U-box 119 168 - -
Pumo5g03685 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 168 IPR013083 -
Pumo5g03685 338 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Pumo5g03685 338 MobiDBLite consensus disorder prediction 240 258 - -
Pumo5g03685 338 Pfam Ring finger domain 119 162 IPR001841 -
Pumo5g03685 338 CDD RING-H2_EL5-like 119 162 - -
Pumo5g03685 338 MobiDBLite consensus disorder prediction 201 258 - -
Pumo5g03685 338 FunFam E3 ubiquitin-protein ligase ATL6 80 168 - -
Pumo5g03685 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03685 Pumo-Chr5 86361863 86362879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03685 7 296 Rapid Response to Elicitors AT3G05200 48.822 9.34e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03685 K10664 - gmx:100781706 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03685 5 86361863 86362879 Pumo5g03685 5 86361863 86362879 ECH
Pumo5g03685 5 86361863 86362879 Pumo3g01941 3 30542964 30544574 PCT