Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03679 ATGGATCATCAAGGGCATAGCCAGAACCCATCTATGGGGGTGGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCCAGGCCAAATAACTGGGCCACCGGGGTCGGTTGTGACATCAGTTGGGACCATTCAATCCACCGGTCAACCTGCTGGAGCTCAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCACCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGGATGATATCAGCTGAGGCACCAGTCATCTTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGATATTGCTGCTGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCCCTTCCGTACTGCTACATGCCGCCTCAGCATGCACCCCAAGTTGGAACTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCACAGCCACCAGACCAACGACAGTCATCCCCAGAACATTAG 774 0.4767 MDHQGHSQNPSMGVGAQLTYGSNPYQPGQITGPPGSVVTSVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPEH 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03679 257 FunFam Nuclear transcription factor Y subunit gamma 63 176 - -
Pumo5g03679 257 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 199 - -
Pumo5g03679 257 Gene3D Histone, subunit A 60 176 IPR009072 GO:0046982
Pumo5g03679 257 MobiDBLite consensus disorder prediction 1 35 - -
Pumo5g03679 257 Pfam Core histone H2A/H2B/H3/H4 66 161 IPR007125 GO:0003677
Pumo5g03679 257 SUPERFAMILY Histone-fold 70 170 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03679 Pumo-Chr5 86324512 86327249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03679 1 244 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.633 2.30e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo5g03679 CBFD_NFYB_HMF 5.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03679 K08066 - gmx:100527803 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03679 5 86324512 86327249 Pumo5g03679 5 86324512 86327249 ECH