Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03657 ATGTTTCAGAACATAGTGAATGCCCTCAACACCAGCGACGACAACATGAACAAGAACAAAAACGATGGCATAATACGAGGGAGGGTGATCTTGATGAAGAAAAATGTGCTGGACTTTAACGACTTGAGTGCCTCCGTGCTAGATCGTCTTCACGAGTTCGTGGGCAAACGCGTTTCTCTCCAACTCATAAGTGCTCTTCAACCTGATCCTGGGAATGGCACGAAAGGAAAACTTGGGAAGCCTGCATATTTGGAAGACTGGATCACCACAATCACACCCTTGACAGCGGGTGAATCGGCATTCAGGGTTACATTTGATTGGGATGAAGATATTGGAACCCCAGGAGCATTTTTAATAAGAAATAATCATCACAGTGAGTTCTACCTGAAAAGCTTGACACTTGAAAATGTTCCGGGCCACGGTGTCATCCACTTTATCTGCAACTCTTGGGTATACCCTGCACATAAATATAAAACGGATCGCATTTTCTTCAGCAACAAGACATACCTTCCAAGTGAAACACCAGTGCCACTTCTTAAGTATAGAGAAGAAGAACTAGAGAATCTAAGAGGAGATGGAAGAGGGACCCTGCAAGTGTGGGATAGGGTCTATGATTATGCATACTACAATGACTTGAGTGATCCGGATAAGGGTCCACAATATGCTCGTCCAGTTCTAGGAGGGTCCACTGAATATCCCTACCCTCGAAGGGGAAGAACTGGTAGACCACCTACAAAATCAGATGCTAATAGTGAGAGTAGATTGAATTTTGCCATGAGTTTGGACATCTATGTTCCAAGGGACGAGAGATTTGGTCACTTGAAATTGTCAGATTTTCTTGCTTATGCACTGAAATCCATAGTTCAAGTTGTCAAACCCGAGCTGGAATCTCTATTCGACAGCACCCCTGAAGAGTTTGATAGCTTTGAAGATGTGTTTAAACTCTATGAAGGTGGGATTAAGGTGCCTGAAGGTATACTTAAGAATGTTAGGGATAAAATCCCTGCAGAGCTGCTCAAAGAAATTCTCCGAACTGATGGTGAAAGGTTCCTCAAGTTTCCCGTGCCTCAAGTGATTAAAGAGGATAAGTCTGCATGGAGAACGGATGAAGAATTTGCTAGAGAGATGCTAGCCGGTGTAAACCCTGTTATAATTCGCTGCCTCCAAGAATTCCCACCAGCAAGTAAGCTAGATTCTAAAGTCTATGGTGATCAAACCAGCACAATAAGAAAAGAGCACATTGAGAGCAACATGGATGGGCTCACAGTACATAAGAGAGCACATACAATAAGTTATTTGAACTAA 1305 0.4307 MFQNIVNALNTSDDNMNKNKNDGIIRGRVILMKKNVLDFNDLSASVLDRLHEFVGKRVSLQLISALQPDPGNGTKGKLGKPAYLEDWITTITPLTAGESAFRVTFDWDEDIGTPGAFLIRNNHHSEFYLKSLTLENVPGHGVIHFICNSWVYPAHKYKTDRIFFSNKTYLPSETPVPLLKYREEELENLRGDGRGTLQVWDRVYDYAYYNDLSDPDKGPQYARPVLGGSTEYPYPRRGRTGRPPTKSDANSESRLNFAMSLDIYVPRDERFGHLKLSDFLAYALKSIVQVVKPELESLFDSTPEEFDSFEDVFKLYEGGIKVPEGILKNVRDKIPAELLKEILRTDGERFLKFPVPQVIKEDKSAWRTDEEFAREMLAGVNPVIIRCLQEFPPASKLDSKVYGDQTSTIRKEHIESNMDGLTVHKRAHTISYLN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03657 434 Gene3D - 275 364 IPR027433 -
Pumo5g03657 434 Gene3D - 365 430 - -
Pumo5g03657 434 FunFam Lipoxygenase 170 274 - -
Pumo5g03657 434 SUPERFAMILY Lipoxigenase 170 426 IPR036226 -
Pumo5g03657 434 SMART LH2_4 23 166 IPR001024 GO:0005515
Pumo5g03657 434 FunFam Lipoxygenase 15 169 - -
Pumo5g03657 434 Gene3D PLAT/LH2 domain 16 169 - -
Pumo5g03657 434 PRINTS Plant lipoxygenase signature 161 182 IPR001246 GO:0016491
Pumo5g03657 434 PRINTS Plant lipoxygenase signature 303 324 IPR001246 GO:0016491
Pumo5g03657 434 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Pumo5g03657 434 PRINTS Plant lipoxygenase signature 135 153 IPR001246 GO:0016491
Pumo5g03657 434 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Pumo5g03657 434 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Pumo5g03657 434 PRINTS Plant lipoxygenase signature 233 252 IPR001246 GO:0016491
Pumo5g03657 434 MobiDBLite consensus disorder prediction 225 251 - -
Pumo5g03657 434 PANTHER LIPOXYGENASE 26 425 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pumo5g03657 434 ProSiteProfiles PLAT domain profile. 40 165 IPR001024 GO:0005515
Pumo5g03657 434 CDD PLAT_LH2 25 166 IPR042057 -
Pumo5g03657 434 Pfam Lipoxygenase 178 425 IPR013819 GO:0016702|GO:0046872
Pumo5g03657 434 Pfam PLAT/LH2 domain 65 164 IPR001024 GO:0005515
Pumo5g03657 434 Gene3D - 170 274 - -
Pumo5g03657 434 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 25 169 IPR036392 GO:0005515
Pumo5g03657 434 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 434 IPR013819 GO:0016702|GO:0046872
Pumo5g03657 434 FunFam Lipoxygenase 275 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03657 Pumo-Chr5 86190591 86198250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03657 1 425 Acyl Lipid Metabolism Gene Families AT1G55020 67.371 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03657 K15718 - gmx:100815550 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03657 5 86190591 86198250 Pumo5g03657 5 86190591 86198250 ECH
Pumo5g03657 5 86190591 86198250 Pumo3g01970 3 30810287 30822785 PCT