Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03656 ATGTCAGATTCACAGTCCAATTCAGAGATTTTCAGCGTTCGGATTGTCACCATCGACTATTACATGGCACCGCCAATCCCAGACGCCGATATCTGTTATAGCAGCTTCCACGGTGGAAAGGTGAACGAGGTGCCTGTGATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCAGATATAACACTTCAACTGGGCCAAGGTGATGCATTCACCTATAAGGTAGCTGCTTCACTTGAGAAAGCCTTAAAGCTTAAAGGCAGTGCTGGTTCAACGAGACAACATGTACATGGATGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCATTCACTTGAGGAATTATTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTTATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAAGTTCCGCCTCCCCATACCTGACACTTGCAAGAAATTAAATATTGATAGCCAGCATAGAAAGGCAGATCCAGAGGCTCAAGCATGTTTAGAGTCAAAATTGTGGATGTCTTCCATGATCTCATCTGAGTGGATGTGGTCACCACCAAGCAAATCCGGTGCTTCTTCAAATGATGAGGCTCACTGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTGGATGGTATCCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCTATATGGGAGGAACAGCAGAAACGGACTGGGATTCACGAGGCTACCATGCTTTCTGATCCTGGCAAACCACTTCCAGAAGATGTTATGAAACTTTTTTCTGTTGGGCTTGGCTTTGAGAAAAAATTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTATTTTGTACTCCTTCTGGGAATGAATTGAGAGAAACGGACATAATAGGCTCGGCATCACCACCAGCTTCATTATGCAAAAATTCCAAATTGCATGAGGAAGGGACTGATGCAAATCTTGAAATGTTGACTATGGATGAAATCCCATCATCTGAAATGATTGGAACATTGGACATAAAGGCTGCTGATAAGGAAGCACAAAATCTTATCAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTTGTTTATGAAACAATCTTGACTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGGAGGAAGCTAATATGGCTTATGAGAGTGAGTCCCAAAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTGGAGTTACCAAAGGAAAAGCCTTCTCATTCCTTGGATCATAATTGTCCTATTGGAGCTTCATCAAGCAGTATGTTACCCCAAGTTGATGGTTCTAATGATGATGAGTTCTCAAGTCCGCGCGGTAATTTAGCTGGAACCTCTTCTCTAGTAGAGATAAACAGTGAATACACAAAGGCTTCTGAGTACCATGTACTGCACAATACTGACACAAGTACAGTTAGTAAAGATACAAGGAATAAACAATGGGGGTCTTTGCCTTTTTCCACGATTGATAAGGTTAATAACGATGGAGAGCATGCTACTTTACGTGTGACTCATCCATTTGAAAGTGAGACTGGAGATTCTGCTCACTCAGATTACTTAAACAGAAATGAGGTTAGAAATAGTGCTTGTATTATAAGGAACAAGAGCAGAGATGCTTCGGATTCAAAAGAAGTACATAGATTGGTTAACTGCTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACAAGCTGAATGCGAGTCTGGAACTACTAAAAAGCCTTTTTTAGACAGGCATGGAGAACCAAATACATGCCTTTGGCAAAAACAACTGGATTTAAAAACAATGCAAACTGATGAAGAAGAAATGGAACACCAGAAGAATTGTGAATGTGAAGTTAGCAATCATGCTAATTTAGTGCATGGGAAACTGCCCCTTCCAGCTGGCAGTAACAATCTTTTACAAGCCAGTAGGCCAAAAGATGAATGTTTTGGTCAACATGAAATGGAAGGTTTAGAAGCAAGTACAGTGTTGAGGAACTGTACAAATGGAGGGTCTGCTTTAATGCATGGTGGATCAGGCCTCCATAAGCCTGAAAAATTATATTTAATTGATTCCATAGACCAATCTGTGGCTTGCAGGGGTGAAAACCTCAAGGTTGGCACAGCTTTTACAAAACCTGTAGCTTCTGATGCCTGTACCCAAAATCCCTTTTTAGACACTCGCTTGAGAACACCTGCTGTTCATACAGTCAGAACTCCTGAGAGGAGTCCACAAACTGGTTCTTCTGCTTCAAGTAGTGTGCAAAGCTCGTTCATTGATGATAAAGTGTCTGGCAAATATAATTCCGAGAATCAAAGTTCTCACGGAAGCATATCTTTTGTGCAACATGGTCAGATGGCATTTTGTGAGAATTCTGTGGAGAAAAGTGCTGCAAGTGATGTGCAAGTATTGTTAAGTGAAAAAGTGGATGGTCAAAAGCTGTCTGAAAATTTGTTGCACGGGACTATGAAATTAACTGAAATAACCACAGGCAAGAACCCTCCGGCTGATAAGAATCTTGAAAGTACTTTGACCTTGCCAGCAACTTCCAATACCCATTTACATTTGGACGAGGACAGCTCTGATGAAATGCTAGGGGATGCGCTGGATGTCTTTTTTCCAACTTCTGCAAGGGATTCTGAGAAAGGGATGGAAACTTGCAATGAGTATGTTACAATTAAAACCCTTACAACTAATGGGACAAAGGGTGTCACCGCACACTATCAAAATGATGGCTCTCACCTATATCTATTGACACCTAATATTTTGCCTCCTTCTGTAGGCTCTGTGCGTAGATGGCTACTTTGTAATGAGAGAGGGCACATTCGTGATCATATACATCAAGAAACAGATGCAGAGGACAAGGATGTACCTAAATGTGCTTCTGAGACTGAACCTCCTCTTAGGCCTAATCAAGATGCTGATAAAGAAAAGAAGCCTCCATGCATTGGAGAAGGACAGACAGAAAGAGTGAAAGCATACCTAGATGACTCACGAGATATTTCTCAGATATCAGGCCCTGAAGGAAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCAAGGCCCTGCAAGCTTTGGCTGTGGACAGCAATTGACATTACTTAGTATAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGACGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTGTTGAAGTTCTAGTTCTTTTGCATAGTAAATTTGTACCTTGTCAGAGAAGTTTTGATGGTCTATCTGGCTGTAAAATATTGGTCTTCACTGATGAGAAACTCTTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCGTCACATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCATCTGAGTCTTTGATTGCTTCTGAAGATACCAATACTTCTGAAAAAGATATCTTGGAACTGGACATCCATGATACCCCTAGTCTAGATTGTTGTGTGCCAGAAAATTCAATAATTGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGTAGAATTGTCCTGAATGTATGGCGATTGATCCGTGGAGAAGTTAAGCTGAACTTATATTCCGTTGAAGCTGTAGCTGAATCTGTATTGAGGCGTAAAATTCCTTCATTTCACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTTTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTATCTTGCCATCTCACCTGGAAAACAACAGGTTGCTTCTCAGCCTGCCATGGAGTGCCTTCCCCTAGTAATGGAACCGGAATCTGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTTTGCACTTGTCTCGGTAAAGTTGTGGCATCAAAGGCCAACACACTTGGGGTTAGTTCATTCTCACCAGAGCAACATGTTCTGCAGGATTTAAAGAATCAAATCTTGCTCTCTCCGAATGGTGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGTGTACTGCCCCGCTTATTGGAAGAAATCTTAACAACAAGAATTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTTCAGAGAAAGTTCTTCAGCGGATATTTAATGCAAGACAACTTGCTTTGAAGCTCATAGCGAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATCGTTCAGTGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATAAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGACGCACTGTCAAAGAGTCTTTCCAAATTGGGAGTGAGATTGCCTCTGCTATCACTGCTATGAACCCTAGCCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTCCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTCTTTGAGCATCAGGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGGAAGAATATGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATCTCATCACTTCCTCCTGCTGCAATTGTAGCCAGTAAGGCAATGAGGGTTGACTCTAGGGCAGAACCACGTTATGCTGAGAGAATACCCTATGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTACATTAATAAACAAATAATACCAGCTTTACAGCGGGTATTTGGGCTTGTTGGTGCTGACCTGAACCATTGGTTTACAGAGATGCCCCGCCCCACAAGGGAAGCTTCTGCAAAGCATACATTAACTACAAATTTCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGATAGGTTGGTTCAGGCATCAACCCGTTTATGCGATCAATGTTCTGAAAATGAAGTAGCTGCTGCGACAGCAGTTATTAGTAAGACTTCAAAGTTAGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTAGAAAGTGGTGTGAAGTGTACGTCTATTTCATGCTTGGTGTTCTATGAGAGGCGGAAGATTCAGAAAGAACTGCTAGCTGCCACCCATGTTGCTGCAGATAAAGACTTGTATCCGAGATGCACTGTGGAATGGTTCTGA 5928 0.4124 MSDSQSNSEIFSVRIVTIDYYMAPPIPDADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCSDITLQLGQGDAFTYKVAASLEKALKLKGSAGSTRQHVHGCSLVRARKFYGYHSLEELFVKIYLYYPQDVSRAANLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSKMKFRLPIPDTCKKLNIDSQHRKADPEAQACLESKLWMSSMISSEWMWSPPSKSGASSNDEAHCPKRQSICELEGDTSVDGILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRTGIHEATMLSDPGKPLPEDVMKLFSVGLGFEKKFIELCSEAETSLFCTPSGNELRETDIIGSASPPASLCKNSKLHEEGTDANLEMLTMDEIPSSEMIGTLDIKAADKEAQNLIKWLATSQAAEDINSDDELVYETILTPLLPAATIDKVLEEANMAYESESQKECQDILDSIDDMLELELPKEKPSHSLDHNCPIGASSSSMLPQVDGSNDDEFSSPRGNLAGTSSLVEINSEYTKASEYHVLHNTDTSTVSKDTRNKQWGSLPFSTIDKVNNDGEHATLRVTHPFESETGDSAHSDYLNRNEVRNSACIIRNKSRDASDSKEVHRLVNCSLRDLMRRKRSYRVEQAECESGTTKKPFLDRHGEPNTCLWQKQLDLKTMQTDEEEMEHQKNCECEVSNHANLVHGKLPLPAGSNNLLQASRPKDECFGQHEMEGLEASTVLRNCTNGGSALMHGGSGLHKPEKLYLIDSIDQSVACRGENLKVGTAFTKPVASDACTQNPFLDTRLRTPAVHTVRTPERSPQTGSSASSSVQSSFIDDKVSGKYNSENQSSHGSISFVQHGQMAFCENSVEKSAASDVQVLLSEKVDGQKLSENLLHGTMKLTEITTGKNPPADKNLESTLTLPATSNTHLHLDEDSSDEMLGDALDVFFPTSARDSEKGMETCNEYVTIKTLTTNGTKGVTAHYQNDGSHLYLLTPNILPPSVGSVRRWLLCNERGHIRDHIHQETDAEDKDVPKCASETEPPLRPNQDADKEKKPPCIGEGQTERVKAYLDDSRDISQISGPEGKSSFTPLSQIGFQGPASFGCGQQLTLLSIEILAESRGDLLPDPQFDGINIVALGFQNDSDSIVEVLVLLHSKFVPCQRSFDGLSGCKILVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLIASEDTNTSEKDILELDIHDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAESVLRRKIPSFHHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQDLKNQILLSPNGVMFVPSKVRRGVLPRLLEEILTTRIMVKQAIKKLAPSEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHKKWNAKVIYGDTDSMFVLLRGRTVKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRICLKDFIFAKEVRLGTYSARISSLPPAAIVASKAMRVDSRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNHWFTEMPRPTREASAKHTLTTNFHRTRIDYYYLSKHCVLCDRLVQASTRLCDQCSENEVAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSISCLVFYERRKIQKELLAATHVAADKDLYPRCTVEWF 1975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03656 1975 Gene3D DNA Polymerase, chain B, domain 1 30 194 - -
Pumo5g03656 1975 MobiDBLite consensus disorder prediction 1029 1072 - -
Pumo5g03656 1975 FunFam DNA polymerase 1683 1851 - -
Pumo5g03656 1975 SUPERFAMILY DNA/RNA polymerases 1428 1841 IPR043502 -
Pumo5g03656 1975 Gene3D Palm domain of DNA polymerase 1427 1672 IPR023211 -
Pumo5g03656 1975 MobiDBLite consensus disorder prediction 821 839 - -
Pumo5g03656 1975 Pfam DNA polymerase family B 1382 1829 IPR006134 GO:0000166|GO:0003677
Pumo5g03656 1975 FunFam DNA polymerase 1123 1424 - -
Pumo5g03656 1975 SMART polmehr3 1114 1620 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo5g03656 1975 Pfam DNA polymerase family B, exonuclease domain 1116 1252 IPR006133 -
Pumo5g03656 1975 Pfam DNA polymerase family B, exonuclease domain 55 211 IPR006133 -
Pumo5g03656 1975 MobiDBLite consensus disorder prediction 498 529 - -
Pumo5g03656 1975 Gene3D Helix hairpin bin 1507 1567 - -
Pumo5g03656 1975 Pfam C4-type zinc-finger of DNA polymerase delta 1874 1947 IPR025687 -
Pumo5g03656 1975 Gene3D - 1147 1424 IPR036397 GO:0003676
Pumo5g03656 1975 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1968 IPR030559 GO:0006281|GO:0016035|GO:0019985
Pumo5g03656 1975 PRINTS DNA-directed DNA-polymerase family B signature 1606 1614 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo5g03656 1975 PRINTS DNA-directed DNA-polymerase family B signature 1441 1454 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo5g03656 1975 PRINTS DNA-directed DNA-polymerase family B signature 1550 1562 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo5g03656 1975 MobiDBLite consensus disorder prediction 1052 1072 - -
Pumo5g03656 1975 CDD POLBc_zeta 1389 1837 - -
Pumo5g03656 1975 SUPERFAMILY Ribonuclease H-like 36 1388 IPR012337 -
Pumo5g03656 1975 MobiDBLite consensus disorder prediction 1029 1045 - -
Pumo5g03656 1975 MobiDBLite consensus disorder prediction 818 839 - -
Pumo5g03656 1975 CDD DNA_polB_zeta_exo 1113 1363 - -
Pumo5g03656 1975 ProSitePatterns DNA polymerase family B signature. 1608 1616 IPR017964 GO:0000166|GO:0003676
Pumo5g03656 1975 FunFam DNA polymerase 30 195 - -
Pumo5g03656 1975 Gene3D - 1683 1849 IPR042087 -
Pumo5g03656 1975 MobiDBLite consensus disorder prediction 489 529 - -
Pumo5g03656 1975 FunFam DNA polymerase zeta 1508 1567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03656 Pumo-Chr5 86175338 86189810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03656 1118 1957 Core DNA Replication Machinery Family AT5G63960 29.147 9.92e-90 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03656 K02350 - gmx:100777934 3613.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03656 5 86175338 86189810 Pumo5g03656 5 86175338 86189810 ECH