Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03654 ATGGCACCAACGAAGAAACCTAGAATTACGAATAAGCGGTTTTCAAGTTTAAGTGAGGTCCCTCCTGAGAAAGATGAAGTCGGCCCAAGTAAAAATATGCAACGGAAGAAAAAGATGTCTGATAAATTGGGACCTAAATGGGAAGACGAGGAACTAGAGCGGTTTTTTGAAGCGTACAGGAAGCATGGGAAAGACTGGACGAAGGTGGCTGAAATTGTATCTAGTAAATCTGTTGAAATGGTGGAGGCTCTTTACAATAGGAATCAGGCATACCTATCCCTCCCGAAGGGGGCAGCTTCTGCGGTTGGCCTAATTGCAATGATGACAGATCACTATAATATGATGGAAGAGAGTGATAGTGAAAGGGAGAGCAATGATGTACCAGGATCTCGACAACCTATGAAACGAAAGTGTGGAAAAATTCAGCTTAGTGTATCCAATGATTCTGTCCAGTCTCAGTCAATTGCTTCCAAGGATGTCTGCCTTTCTCTATTGAAGAAAAGACAATTTGATGGTAACCGACCTTGGCCTGTTGGGAAAAGGACGCTTCGTTTCCCAACTAACTACTCTAAGACCAATGATAGGGAAAATTATGTTTTGCCAAATAAAAGAAACCCAAAGTCAATGTTTGATGCTAATGATGATGAAGCTGCACATGTTGCGGCTATGGCATTAACTGAGGCTGCACAAAGAGGTGTCTCTCCCCATGTATCTCAAAATCTGTCCAAAAAATCAAAGCAGAAGTTCTCTCCTGTTCAGAGTGGGCAAAGAATGCACCAAGAGTCTGAGACAGTTCCTGCCAAGTTTTATGATGCTTCTATTGATGAACAGCGCTTGGAAGATAAAAGCTCTTCCTGGGATGGTTTGCACACTTTGGCTGATCTGTGTCTAATGGAACCAATATTTACAATGGACTCTGAATCATCTGTCCAGTTAAAGGAAGAAAAAACGACTCTCAATAAAGATGAGAAGTCTGCTTTACCTGAAGGAAAATCAACAAGCCAAAACCGAGATAAAATTAAACTTCAGGGTTTGAAAAAGAAGGTTGATCATGCAGTCCCTGAAGTTGGTTCATCAACTAAACATAGAAGTAGACGTAAGACGATTTTACAGAGACCATTCACACCTAAAGAGAAGTCTTCTGAGAAAATATTGAAAAGTAAACAGAATAAGAATTTGACCCCCGTACAAGATAGGACATTATTTTTAAAGGAAAAGCTTTCTGGTTGCTTGTCATCTCATATGGTTCGTCGATGGTGTATGTTTGAATGGTTTTATAGCGCAATTGATTATCCATGGTTTTCCAAAAGGGAGTTCATGGAATACTTAAATCGTGTTGATCTAGGGAGAATCCCAAGGCTAACTCGTGTTGAGTGGAGTGCCATAAAAAGCTCCCTTGGCAAACCTCGCAGGTTTTCAGAACGCTTTCTTCATGGAGAAAGACAAAAACTTAAACAGTATCGTGAATCTGTTCGGAAATATTACAATGAACTGCAGACTGGTATCAGGGATGGACTTCCAGCAGATTTGGCAAAACCGTTATGTGTTGGACAACGAGTAATTGCTCTCCACTCAAAAACAAGAGAGGTTCATGATGGAAGTGTGCTTACAGTTGCCCATGACAAGTACAGTGTTCAGTTTGACCGTCCTGAATTGGGTGTTGAACTAGTCATGGACATTGATTGCATGCCTTTGAATCCATTGGATAATATGCCAGAAACTCTGAGGTGGCAGATTGGTGCTGGTAATGTCACTCTTATGAGTAAAAAGCCACACATGAAAGGAAATTCAAGTTTTGGGGGGTGCATGACATCTGTTTCAAGTGGACCTGTGGAGAAGGCACCCACCTCTTCAAGTACTTTGGCTAAGCACAACTCTTCAATGTGTGCTCAATCATGTACAATGATAAATGATCAAACTAAGGAAGCAGGCATACATGCCCTTTCCAAGCTAGGACATGCTCTGGATAAAAAGCACAAATTATTAAAATTGTTAATGGAACTTAAAAATGCAAATAGTGAGATAATGGAAAACCAAAATGATGCAGACTGCTTTAATGCTTCGAAGGCTTTCAAGAAGCATTACGCCATGTTATACATCTTAAGGAAGCCAGTGGACAGGCATGTTTCTAATGCTCTGTTTCATTTGAGGAAACATGATACTTACTTGAGAAACTCTCTGCCACCACGGATGAATCCCAAAGCAAGTTTTGACATTCACGATGGCCTTCCCAATACAATGGATAGTTCTCTGGTGCAAGAGCCAGGGTCCACTGTCGTTGAAACTATGGAAGGATCCAGACTTAGAGCACGTGCTATGGTGGATGCTGCATCTCAGGCATTGTCTTCAACGAAGGAAGGTGAAGATGCTTCCATGAGGATTAAACAGGCATTGAATTGTGCGGATAATAAGCAGCTGGCAACCAAGTCTAGGTTACCTGTGATTAGGTCCCAAGAGCAAATGAGTGGAACTTTTGATTACCATAATCGGTCAATTTCTTGTCCAACGGAGCCTCTACTCAATGATGCATCTGGTAAAAAACTGCATAATGGTTCTAACAAAGTTGATACTCAAGTTCCCTTGGACCTCATCACTTCCTGTGTCGCCACAATGATCATGATACAGACTTGTGCCGCTCAACAATGTTCTCAAGCTGATGTGACTCAGATATTTGATTCTGCTGTTACCAGCCTGCGTCCACGCTGTCCAGGAAACCTTCATGTTTACAGAGAGATTCAAATGAGCATGCAAAGAATTAAGACCCAGATTTTAGCTCTTATCCCTACTTGA 2790 0.4143 MAPTKKPRITNKRFSSLSEVPPEKDEVGPSKNMQRKKKMSDKLGPKWEDEELERFFEAYRKHGKDWTKVAEIVSSKSVEMVEALYNRNQAYLSLPKGAASAVGLIAMMTDHYNMMEESDSERESNDVPGSRQPMKRKCGKIQLSVSNDSVQSQSIASKDVCLSLLKKRQFDGNRPWPVGKRTLRFPTNYSKTNDRENYVLPNKRNPKSMFDANDDEAAHVAAMALTEAAQRGVSPHVSQNLSKKSKQKFSPVQSGQRMHQESETVPAKFYDASIDEQRLEDKSSSWDGLHTLADLCLMEPIFTMDSESSVQLKEEKTTLNKDEKSALPEGKSTSQNRDKIKLQGLKKKVDHAVPEVGSSTKHRSRRKTILQRPFTPKEKSSEKILKSKQNKNLTPVQDRTLFLKEKLSGCLSSHMVRRWCMFEWFYSAIDYPWFSKREFMEYLNRVDLGRIPRLTRVEWSAIKSSLGKPRRFSERFLHGERQKLKQYRESVRKYYNELQTGIRDGLPADLAKPLCVGQRVIALHSKTREVHDGSVLTVAHDKYSVQFDRPELGVELVMDIDCMPLNPLDNMPETLRWQIGAGNVTLMSKKPHMKGNSSFGGCMTSVSSGPVEKAPTSSSTLAKHNSSMCAQSCTMINDQTKEAGIHALSKLGHALDKKHKLLKLLMELKNANSEIMENQNDADCFNASKAFKKHYAMLYILRKPVDRHVSNALFHLRKHDTYLRNSLPPRMNPKASFDIHDGLPNTMDSSLVQEPGSTVVETMEGSRLRARAMVDAASQALSSTKEGEDASMRIKQALNCADNKQLATKSRLPVIRSQEQMSGTFDYHNRSISCPTEPLLNDASGKKLHNGSNKVDTQVPLDLITSCVATMIMIQTCAAQQCSQADVTQIFDSAVTSLRPRCPGNLHVYREIQMSMQRIKTQILALIPT 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03654 929 Pfam Myb-like DNA-binding domain 46 81 IPR001005 -
Pumo5g03654 929 MobiDBLite consensus disorder prediction 309 339 - -
Pumo5g03654 929 SUPERFAMILY Homeodomain-like 42 90 IPR009057 -
Pumo5g03654 929 MobiDBLite consensus disorder prediction 236 261 - -
Pumo5g03654 929 Pfam DIRP 424 524 IPR033471 -
Pumo5g03654 929 Coils Coil 661 681 - -
Pumo5g03654 929 MobiDBLite consensus disorder prediction 1 44 - -
Pumo5g03654 929 MobiDBLite consensus disorder prediction 308 339 - -
Pumo5g03654 929 MobiDBLite consensus disorder prediction 18 44 - -
Pumo5g03654 929 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Pumo5g03654 929 Coils Coil 477 497 - -
Pumo5g03654 929 Gene3D - 8 98 - -
Pumo5g03654 929 PANTHER LIN-9 357 929 IPR010561 GO:0006351|GO:0017053
Pumo5g03654 929 CDD SANT 46 81 IPR001005 -
Pumo5g03654 929 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 73 IPR017930 -
Pumo5g03654 929 SMART DIRP_2 425 526 IPR033471 -
Pumo5g03654 929 SMART sant 43 91 IPR001005 -
Pumo5g03654 929 MobiDBLite consensus disorder prediction 236 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03654 Pumo-Chr5 86155983 86165623 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo5g03654 DIRP 3.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03654 - - gsj:114405333 850.121