Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03651 ATGGAAGAAGATGATGATTATGTGGAGTATGTGCCCGTGGCCAAGCGTCGGGCCTTGGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAGGCCTCTGCTGCCACTGACGATGATTTGGAGAAACAAAGAGTGGCTGAAACTAAGCCCAGTCTTCTGGTTAAAGCGTCGCAGATGAAACGAGAACAACCTGAGATCAGCGTGACAGAGCAGATTGTTCAGCAGGAGAAGGAGATGATTGAAAACTTGTCAGATAGGAAAACCCTCATGTCTGTCCGTGAATTGGCTAAGGGGATTACTTATACGGAACCTTTGCCTACAGGGTGGAAGCCGCCTTTGTATGTGAGAAGGATGTCTAAGAAGGAGTGTGATTTGATTCGAAAGCAGTGGCATATAATTGTTGATGGCAATGATATCCCACCCCCGATTAAGAATTTTAAGGACATGAGGTTTCCGGAGCCAGTTTTGAAGAAGTTGAAAGCTAAGGGGATTGTACAACCAACACCCATTCAGGTGCAAGGCCTGCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCGTTCACGGGTTCTGGAAAAACTCTGGTCTTTGTGCTTCCAATGATCATGGTAGCAATGCAAGAGGAAATTATGATGCCTATTGTTCCTGGAGAAGGTCCATTTGGTTTGATTATTTGTCCATCAAGGGAACTGGCTAGGCAGACGTATGAAGTGGTTGAACAATTCTTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTCAGGCCCTTGCTTTGTATTGGTGGAGTGGATATGAGATCGCAGCTTGAGATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACACTAGATGAGGCTGATCGATTGGTTGATTTGGGATTTGAGGATGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCTACTATGCCAACCAAAATTCAGAACTTTGCCAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCAGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGCCTACAAAAAACCCCACCTCCTGTTCTGATATTCTGTGAGAACAAGGCTGACGTTGATGACATCCATGAATACCTTCTCTTGAAAGGAGTGGAAGCAGTGGCCATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTGCAGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTATGATATGCCAGCTGAAATTGAGAATTATGTCCATAGGATTGGACGGACTGGACGATGTGGAAAGACTGGTATAGCGACAACATTTATAAACAAGAATCAAAGTGAGACAACACTACTTGATTTGAAACACCTCTTGCAAGAAGCCAGACAAAGGATTCCCCCAGTTTTGGCTGAGTTGAATGATCCAATGGAAGATAATGAAGAAATCACAGACATAAGCGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGATTGTCCTAAATTAGAGCATCAGAAGAGCATGGCGATTGCAAATAATAGAAAGGATTATTTTGGGTCTGGAGGTTACAGAGGGGAAATTTGA 1767 0.4352 MEEDDDYVEYVPVAKRRALEAQKILQRKGKASAATDDDLEKQRVAETKPSLLVKASQMKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLYVRRMSKKECDLIRKQWHIIVDGNDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEARQRIPPVLAELNDPMEDNEEITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03651 588 Coils Coil 65 85 - -
Pumo5g03651 588 ProSiteProfiles Zinc finger CCHC-type profile. 547 562 IPR001878 GO:0003676|GO:0008270
Pumo5g03651 588 FunFam Probable ATP-dependent RNA helicase DDX41 110 359 - -
Pumo5g03651 588 Pfam DEAD/DEAH box helicase 167 346 IPR011545 GO:0003676|GO:0005524
Pumo5g03651 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 358 IPR014001 -
Pumo5g03651 588 Pfam Zinc knuckle 546 562 IPR001878 GO:0003676|GO:0008270
Pumo5g03651 588 SMART ultradead3 162 373 IPR014001 -
Pumo5g03651 588 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 529 - -
Pumo5g03651 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 529 IPR001650 -
Pumo5g03651 588 CDD SF2_C_DEAD 370 498 - -
Pumo5g03651 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 504 IPR027417 -
Pumo5g03651 588 Gene3D - 112 362 IPR027417 -
Pumo5g03651 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Pumo5g03651 588 SMART c2hcfinal6 546 562 IPR001878 GO:0003676|GO:0008270
Pumo5g03651 588 Pfam Helicase conserved C-terminal domain 382 489 IPR001650 -
Pumo5g03651 588 Coils Coil 500 520 - -
Pumo5g03651 588 FunFam Probable ATP-dependent RNA helicase DDX41 368 530 - -
Pumo5g03651 588 SMART helicmild6 408 489 IPR001650 -
Pumo5g03651 588 SUPERFAMILY Retrovirus zinc finger-like domains 546 567 IPR036875 GO:0003676|GO:0008270
Pumo5g03651 588 CDD DEADc_DDX41 154 359 IPR044113 GO:0000398|GO:0003724|GO:0005524
Pumo5g03651 588 Gene3D - 368 530 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03651 Pumo-Chr5 86121588 86125624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03651 115 524 Eukaryotic Initiation Factors Gene Family AT3G13920 29.298 1.82e-56 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03651 K13116 - gmx:100819984 1156.74