Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03650 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCTCCACAGAGAATACTACTGGAGAAGATGCAGCTGCTGTTAAACAGCAATTGGAGATGCTTGGCCAACTCCATAGTCCAAATTCAAACACTTCAACTACAACAAATAATAGCAATGGGTCAAACACAGATTCACAACCACCTGCTAAGAAGAAAAGAAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCACTCTCGCCAAACACCCTAGTGGCCACAAACCGGTTCGTATGTGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAATTGCACCGTAGAGGCCACAACCTACCGTGGAAGCTGAAACTGAGAACCACCACTGAAGTTCGAAAACGGGTTTATGTTTGTCCAGAACCCTCTTGTGTGCACCACAACCCAGCTCGTGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAAAAGTGGAAATGTGAGAAGTGCTCAAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCGAAAATATGTGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCATCACCCACAGAGCTTTCTGTGATGCACTGAGTGAGGAGAACAACAAGTTCAACGAAGGACAATATGGTTCAAACTTGCAACCACCAATAATCCCAAACCTAGTTGCATCATTACCAATCAATAATACCAATAATCAGAACCACCCATTATCACTCCCTCATGATCTCATGACAACAATTCCCACAAAAACCTTCAACAACAACATTGCTGCACTCACGAGAAGCCTTTCATCCACATCTTCTCCCTCTCAACTAAGCTCAAACTCACCAAACATTAATATGTTCGAGGAAAATGGTCTCCATTCACCTCACATGTCCGCCACAGCATTGCTTCAAAAAGCTGCACAAATTGGCGCAACCGTGAATAGTAACAACAACATGATGAGTGAAAAAAGCTTTGTCACAAGCATGGCACCACCATCATATGGGATCATGAACCCCAACATGCACAATGGTCAACAAGACTTGTCTCAATATAATTTCAATGCTGATGGGATGATGGATGGTGGTAGCAATGGCATGGGAATGAGTGGTTTGGATATGTTTAATGTTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAATCGAAGCAGTGCTTATAATGGTGTTTTGCATGCAATGAATAATGGTACTATGTCAAGTGGCTCCATTGATGTTGGTGGAACTAAAGGGAGTGAGGATGTGAATAATCATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGTGGTGGATGA 1380 0.4246 MSNSNITSCDSWSFSTENTTGEDAAAVKQQLEMLGQLHSPNSNTSTTTNNSNGSNTDSQPPAKKKRNLPGNPDPSAEVIALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSEENNKFNEGQYGSNLQPPIIPNLVASLPINNTNNQNHPLSLPHDLMTTIPTKTFNNNIAALTRSLSSTSSPSQLSSNSPNINMFEENGLHSPHMSATALLQKAAQIGATVNSNNNMMSEKSFVTSMAPPSYGIMNPNMHNGQQDLSQYNFNADGMMDGGSNGMGMSGLDMFNVILDQSKALSKIIEQNNRSSAYNGVLHAMNNGTMSSGSIDVGGTKGSEDVNNHVMTLDLLGIGGGGG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03650 459 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Pumo5g03650 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 410 IPR031140 -
Pumo5g03650 459 Gene3D Classic Zinc Finger 88 115 - -
Pumo5g03650 459 FunFam protein indeterminate-domain 12-like 71 139 - -
Pumo5g03650 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Pumo5g03650 459 SMART c2h2final6 168 188 IPR013087 -
Pumo5g03650 459 SMART c2h2final6 133 163 IPR013087 -
Pumo5g03650 459 SMART c2h2final6 92 114 IPR013087 -
Pumo5g03650 459 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Pumo5g03650 459 MobiDBLite consensus disorder prediction 34 62 - -
Pumo5g03650 459 MobiDBLite consensus disorder prediction 1 77 - -
Pumo5g03650 459 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Pumo5g03650 459 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Pumo5g03650 459 MobiDBLite consensus disorder prediction 1 25 - -
Pumo5g03650 459 Gene3D Classic Zinc Finger 147 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03650 Pumo-Chr5 86102369 86106729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03650 41 328 IDZ Gene Family AT3G50700 54.572 1.74e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g03650 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03650 - - gmx:100776872 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03650 5 86102369 86106729 Pumo3g01979 3 30940739 30944913 ECH
Pumo5g03650 5 86102369 86106729 Pumo5g03650 5 86102369 86106729 ECH
Pumo5g03650 5 86102369 86106729 Pumo3g01979 3 30940739 30944913 PCT