Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03630 ATGAGTCGAGGAGGTGCAGCAGCAGCAGCGAAGGGAAAGAAGAAGGGTGCTACATTCACCATTGACTGTGCAAAGCCAGTGGAAGACAAGATCATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTTGGTGGCAAGGCTGGTGCTCTTGGTGACACTGTTACTGTTTCCCGTGAGAAGACCAAGATCACTGTCACCTCTGACAGTAACTTCTCCAAACGGTATTTGAAGTACTTGACGAAGAAGTACTTGAAGAAACACAATGTGCGTGACTGGCTCAGAGTGATTGCTTCAAACAAGGATAGAAGTGTTTATGAACTGAGGTACTTCAACATTGCTGAGAATGAGGGAGAGGAAGAAGATTAG 378 0.4577 MSRGGAAAAAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVSREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03630 125 FunFam 60S ribosomal protein L22-2 6 125 - -
Pumo5g03630 125 PANTHER 60S RIBOSOMAL PROTEIN L22 1 125 IPR002671 GO:0003735|GO:0005840|GO:0006412
Pumo5g03630 125 Gene3D - 6 125 IPR038526 -
Pumo5g03630 125 Pfam Ribosomal L22e protein family 15 123 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03630 Pumo-Chr5 85963831 85965249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03630 1 125 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 86.400 2.92e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03630 K02891 - cit:102631252 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03630 5 85963831 85965249 Pumo3g01997 3 31105658 31106902 ECH
Pumo3g01997 3 31105658 31106902 Pumo5g03630 5 85963831 85965249 ECH
Pumo5g03630 5 85963831 85965249 Pumo5g03630 5 85963831 85965249 ECH
Pumo5g03630 5 85963831 85965249 Pumo3g01997 3 31105658 31106902 PCT