Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03624 ATGGGCATGCTTAGTTTCCTTTTCATTCTCATTCTTTTACCCTCATTTGAGGCTCTCTCATATGAAGTAGCCATTCCCTCAGATAATGAAGTGTTTATTCCCTCAGAAGTCCAAACCCAAGACATGCAAGCCTTGATTGCACAAGCCTGCATGGACATTGAAAACCAAAACTTATGCCTCACAAACATCCGCAACGAGCTCACCAAAATAGGCCCTCCAAGCCCCACTTCAGTGGTGAGTGCCGCACTCAAGGCCACACTCAACGAAGCAAGAGTGGCCATTGACAACATAACAAGGATCACCACATTCTCCGTCAGTTACCGCGAGCAACAGGCCATAGAGGATTGCAAGGAGCTCTTGGATTTCTCGGTTTCTGAGCTGGCATGGTCGATGGGGGAGATGAGGAGGATCCGTGCAGGAGATACCAATGTGCAATACGATGGCAACCTTGAAGCGTGGCTGAGTGCAGCACTGAGCAACCAAGACACGTGCCTTGAAGGGTTTGAAGGCACTGATAGACGCCTTGAGAGTTACGTCAGTGGAAGCTTGACACAAGTCACGCAACTCATCAGCAATGTTTTGTCCTTGTACACTCAATTGCATAGCTTACCCTTCAAGCCTCCGAGGAACACTACTACTACTCCTCCTCTAACCTTGGAGTTTCCTGAATGGATGACTGAGGGTGATCAAGAGTTGCTTAAAGCCAAGCCACATGGTGTGCGTGCGGATGCGGTTGTGGCTTTGGATGGGAGTGGTCACTACCGCTCTATCACTGATGCTGTTAATGCCGCTCCGAGTTATAGTCAAAGGAGGTATATTATTTACGTGAAAAAGGGGCTTTACAAGGAGAATGTGGACATGAAGAGGAAGATGACCAACATCATGCTTGTGGGTGATGGTATTGGCCAAACCATTGTCACAAGCAACCGGAATTTCATGCAAGGGTGGACCACTTTTCGAACTGCCACGCTTGCTGTATCCGGGAAGGGTTTCATTGCAAGGGACATGTCATTCCGGAACACGGCAGGGCCAGTGAACCATCAAGCCGTGGCACTGCGTGTGGATTCAGACCAATCAGCCTTCTACAGGTGCAGTGTGGAAGGGCACCAAGACACCCTCTACGCCCACTCGCTGCGACAGTTCTACCGCGAATGCGAAATCTATGGCACCATAGACTTCATTTTTGGCAACGGTGCCGCAGTGTTGCAAAATTGCAAAATATACACCAGGGTCCCACTTCCCTTGCAGAAGGTTACCATCACGGCCCAAGGCAGAAAAAGCCCACACCAGAGCACTGGGTTTACGATCCAAGATAGCTATATTCTAGCTACCCAGCCCACATACTTGGGGAGGCCCTGGAAGCAATATTCTAGAACTGTTTACATTAACACATACATGAGTGGGCTGGTCCAGCCCAGAGGGTGGCTTGAGTGGTTTGGAAACTTTGCCTTGAACACTTTGTGGTACGGTGAGTACAGAAATTATGGGCCTGGTGCAGCACTGGCTGGTAGGGTCAGATGGCCCGGTTATCATGTAATTAAAGATGCTTCTACCGCTAGTTACTTCACAGTTCAGCGGTTCATTGATGGGGGCTCGTGGTTGCCAAGGACAGGTATCAGGTTTACAGCAGGCTTGACCAATTGA 1644 0.4939 MGMLSFLFILILLPSFEALSYEVAIPSDNEVFIPSEVQTQDMQALIAQACMDIENQNLCLTNIRNELTKIGPPSPTSVVSAALKATLNEARVAIDNITRITTFSVSYREQQAIEDCKELLDFSVSELAWSMGEMRRIRAGDTNVQYDGNLEAWLSAALSNQDTCLEGFEGTDRRLESYVSGSLTQVTQLISNVLSLYTQLHSLPFKPPRNTTTTPPLTLEFPEWMTEGDQELLKAKPHGVRADAVVALDGSGHYRSITDAVNAAPSYSQRRYIIYVKKGLYKENVDMKRKMTNIMLVGDGIGQTIVTSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYILATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNYGPGAALAGRVRWPGYHVIKDASTASYFTVQRFIDGGSWLPRTGIRFTAGLTN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03624 547 PANTHER PECTINESTERASE 24 535 - -
Pumo5g03624 547 CDD PMEI-like_3 58 202 - -
Pumo5g03624 547 Gene3D - 238 545 IPR012334 -
Pumo5g03624 547 SMART PMEI_2 41 196 IPR006501 GO:0004857
Pumo5g03624 547 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 201 IPR035513 -
Pumo5g03624 547 Pfam Plant invertase/pectin methylesterase inhibitor 45 196 IPR006501 GO:0004857
Pumo5g03624 547 FunFam Pectinesterase 43 202 - -
Pumo5g03624 547 SUPERFAMILY Pectin lyase-like 240 544 IPR011050 -
Pumo5g03624 547 FunFam Pectinesterase 237 545 - -
Pumo5g03624 547 Pfam Pectinesterase 243 530 IPR000070 GO:0030599|GO:0042545
Pumo5g03624 547 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 201 IPR035513 -
Pumo5g03624 547 NCBIfam pectinesterase inhibitor domain 39 201 IPR006501 GO:0004857
Pumo5g03624 547 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03624 Pumo-Chr5 85719301 85722068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03624 1 547 Carbohydrate Esterase AT3G05620 62.366 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03624 K01051 - gmx:100810565 1023.85