Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03616 ATGACTTCTTTGAGCCGAGAATTAGTGTTTCTGATACTCCAATTTTTGGAGGAGGAGAAGTTCAAGGAGTCGGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTCGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAGATCAGGAAGCAGAAATATCTGGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACTCTTAGTAACTTCAGGGAGAATGAGCAGCTGTCCAAATATGGTGATACCAAAACTGCTCGAGGGATTATGTTGATAGAGCTTAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGACAAACTTATCTTCCCTTCCCTTAGGTCATCAAGATTGCGGACGTTGATCAATCAAAGTTTAAACTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAACCCTGATATAAAGACTTTATTTACTGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCCACACCTGTCAATCTTCCTGTTGCTGCGGTTGCAAAGCCTGCTGCTTATACTTCAATTGGTGCTCATGGTCCCTTTCCGCCTGCCGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTCGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCGTCCAAAAACACCTCCGACAACTCCAGGCATGGCTGATTATCAGAATGCTGATCATGAACAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTGTAGAGGAGGTAATTTTGATAATTTTTGTGTTTAATTTAAATGTTTCATATCCTGCTGCTCGACAAACCTCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCATCAAACCTTACTTCTTGCAGTTGGTTCTAATAATGGTGAAATTACACTTTGGGAACTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCCGCGTGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCAACTATTTCTGTCAGCCGTGTCACATGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGTTGGCTCAGCGTATAGAGGTTGATGCCCATATTGGTGGAGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAACTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAGGAGAGCATTCAGTTTGTATTTTCAACTGCCAGTGATGGCAAAATAAAAGCCTGGTTGTATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGACTGTTTTCTTGCGGAACTAGTAAAGATGGAGAATCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGGTTCAGAAAGAAATCCCCTGGTGTCGTGCAGTTTGACACAACCCAAAATCACTTTTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGACATGGACAATATTAATCTTTTAACTAGCACTGAAGCAGAGGGTGGACTACAGGCCCTTCCGCACTTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTTACTACTGCAGACAATGGATTCAAAATTCTTGCTAATGCTAATGGTCTTAGATCCTTGAGAACAATTGAAACTCCAGGATTTGAAGCATTGAGGTCACCAATTGAATCTGCTGCAGTCAAGGCATCTGGCTCTTCTGCTGTTAATGCTAGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCTGTCATGCCTTCTCCAATTCTTAATGGAGTCAACCCCACAGGTCGAAATGCGGAGAAACCTAGAACTGTGGAAGATGGAATAGATAGAGCTAAACCATGGCAGCTGTCTGAAATTGTGGATGCTGTCCAATGTCGGTTAGTTACCATGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTCGACTTTTATATACAAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGTAGTGAACAAAATCCCAATGGGAAGGCAACTGCCGGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATGTCGCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTATGTCTGCATGTGGTGGAAAGGTTTCGTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACTCCCTGCCTCTACCTTTCTGGCTTTCCACCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACAATTCACATATATAATGTTAGAGTGGATGAGGTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTATGGAGCATCGATACGTGGGAGAAAAGAAAATCAGTTCCTATACAACTACCCGCAGGAAAAGCTCCTGTTGGTGACACTCGTGTGCAGTTCCATTTAGACCAAATCCGGTTACTGGTAGCTCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGCATTAGGCAGTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACATTTTGCGATGGCAATACTGGGGTTTTTGATGCCGACAGCTTGAGACTAAGATGTCGTATTGCACTATCCACATACTTTTCACCTGCTGCGGCTTTAAGTGGGAACCAATCTGTGTATCCTGTTGTCGTTGCGGCTCATCCACTAGAGGCCAACCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCTAGTGAATCAGAAGGTAAGTGGGGAACGAGTCCACCTATGGATAATGGAATATTGAACGGTAGGGCAGCATCATCATCTACAACAAGCAACCACACACCCGATCAGGCACAAAGATAA 3429 0.4304 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPSLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPKTPPTTPGMADYQNADHEQLMKRLRPAPSVEEVILIIFVFNLNVSYPAARQTSWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLAVGSNNGEITLWELGLRDRLVSKPFKIWDISACSLPFQAAMVKDATISVSRVTWSLDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRKLFNFEGHEAPVYSICPHHKESIQFVFSTASDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSPGVVQFDTTQNHFLAAGEDGQIKFWDMDNINLLTSTEAEGGLQALPHLRFNKEGNLLAVTTADNGFKILANANGLRSLRTIETPGFEALRSPIESAAVKASGSSAVNASPVNCKVERSSPVMPSPILNGVNPTGRNAEKPRTVEDGIDRAKPWQLSEIVDAVQCRLVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWARSEQNPNGKATAGVVPQHWQPNSGLLMTNDVAGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPLPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPAGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPAAALSGNQSVYPVVVAAHPLEANQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASSSTTSNHTPDQAQR 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03616 1142 ProSiteProfiles Trp-Asp (WD) repeats profile. 923 964 IPR001680 GO:0005515
Pumo5g03616 1142 FunFam Topless-related protein 3 742 976 - -
Pumo5g03616 1142 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pumo5g03616 1142 Gene3D - 571 709 IPR015943 GO:0005515
Pumo5g03616 1142 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Pumo5g03616 1142 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 923 958 - -
Pumo5g03616 1142 MobiDBLite consensus disorder prediction 1123 1142 - -
Pumo5g03616 1142 SMART WD40_4 873 913 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 346 386 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 451 494 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 496 537 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 540 583 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 834 870 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 1062 1103 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 1011 1047 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 916 955 IPR001680 GO:0005515
Pumo5g03616 1142 SMART WD40_4 586 626 IPR001680 GO:0005515
Pumo5g03616 1142 MobiDBLite consensus disorder prediction 1105 1142 - -
Pumo5g03616 1142 Gene3D - 254 548 IPR015943 GO:0005515
Pumo5g03616 1142 Pfam WD domain, G-beta repeat 460 494 IPR001680 GO:0005515
Pumo5g03616 1142 Pfam WD domain, G-beta repeat 922 955 IPR001680 GO:0005515
Pumo5g03616 1142 SUPERFAMILY WD40 repeat-like 795 1109 IPR036322 GO:0005515
Pumo5g03616 1142 FunFam TOPLESS-related 3 414 709 - -
Pumo5g03616 1142 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1127 IPR027728 GO:0006355
Pumo5g03616 1142 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pumo5g03616 1142 ProSitePatterns Trp-Asp (WD) repeats signature. 481 495 IPR019775 -
Pumo5g03616 1142 Gene3D - 771 1112 IPR015943 GO:0005515
Pumo5g03616 1142 MobiDBLite consensus disorder prediction 716 740 - -
Pumo5g03616 1142 SMART ctlh 34 92 IPR006595 -
Pumo5g03616 1142 SMART Lish 4 36 IPR006594 GO:0005515
Pumo5g03616 1142 SUPERFAMILY WD40 repeat-like 340 537 IPR036322 GO:0005515
Pumo5g03616 1142 ProSiteProfiles Trp-Asp (WD) repeats profile. 460 495 IPR001680 GO:0005515
Pumo5g03616 1142 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 465 960 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03616 Pumo-Chr5 85639251 85648495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03616 459 668 Miscellaneous Gene Families AT5G08390 25.701 5.34e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03616 - - gmx:100800771 2138.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03616 5 85639251 85648495 Pumo5g03616 5 85639251 85648495 ECH
Pumo5g03616 5 85639251 85648495 Pumo3g02006 3 31245601 31249136 PCT