Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03610 ATGTTGGTAATGATGGATCTGAAGGAATGGCCATCTTCTCAGGAATTGAATGAGAACAAGAAATGTTGTGCTGATTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCAGCTGGACCCAAGACGTTGTGCAACGCTTGTGGAATTAGGTATCGGAAGAGAAGGGCATGTTCGAGGAAGAGCGAGGAGGGTGTGTTGTTGGAGCGGACATCCTCAGTTGTTGTGAAGAAACAGAGGTGGAAGATGTTGGGGGAAGAGGAACAAGCGGCGGTGTGTTTGATGGCCTTGTCTTGTGGTTTTGTTTTCGCTTGA 315 0.4889 MLVMMDLKEWPSSQELNENKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACSRKSEEGVLLERTSSVVVKKQRWKMLGEEEQAAVCLMALSCGFVFA 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03610 104 PANTHER OS01G0976800 PROTEIN 12 57 - -
Pumo5g03610 104 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 57 - -
Pumo5g03610 104 ProSitePatterns GATA-type zinc finger domain. 23 48 IPR000679 GO:0006355|GO:0043565
Pumo5g03610 104 Pfam GATA zinc finger 23 56 IPR000679 GO:0006355|GO:0043565
Pumo5g03610 104 Gene3D - 17 88 IPR013088 GO:0006355|GO:0008270
Pumo5g03610 104 ProSiteProfiles GATA-type zinc finger domain profile. 17 53 IPR000679 GO:0006355|GO:0043565
Pumo5g03610 104 SMART GATA_3 17 65 IPR000679 GO:0006355|GO:0043565
Pumo5g03610 104 CDD ZnF_GATA 23 56 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03610 Pumo-Chr5 85580835 85582083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03610 16 104 C2C2-Gata Transcription Factor Family AT5G49300 50.893 9.91e-29 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo5g03610 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03610 - - vra:106757446 178.718