Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03609 ATGCACTCCGATCCAGGTCCACTTCTGTCCCAATTCAATAAACCCTCTCTTTTAAAACTCCCAAACAATAAAACCCCACAAACCCTCCTCCTCCTCACCTTCGTTCTCTCAAATTCCATTGCTATCTCAAACCCTACGCTACGCTTCGCTTCGGTTACCCAATCCAATTCCAACATAATGTCGTATCGACCTTCCGCCAACGCCAGGACCGAGGTCCGTCGGAACCGCTACAAGGTCGCCGTCGACGCCGATGAAGGTCGCCGCCGGCGAGAGGATACGATGGTCGAGATCCGAAAGAATCGTAGGGAAGAGAGTTTGCAGAAGAAGAGACGCGAAGGTCTCCAATCGCAGCAGATGCCTGCGTCAGTTCACTCTACTGTAATAGAGAAGAAGTTGGAACACCTACCAGCCATGGTTACAGGTGTTTGGACTGATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGCCCACCAATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGCTTTGTTGAGTTCTTGATGAGGGAGGATTTTCCACAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATTGCTTCCGGAACATCTGAAAACACTAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCCGGAGATTCTCCCAGTTGCCGTGATCTTGTTCTTGGTCAAGGAGCTTTGCTTCCTCTATTGGCACAATTGAATGAGCAGGCCAAGCTTTCTATGCTAAGAAATGCTACCTGGACACTATCGAATTTCTGCAGGGGGAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCTCTTCCTGCTCTTGCCAGTCTTATCCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGGTGTAATTGAAGCTGGTGTTTGTAACCGGCTTGTTGAGCTTCTATTGCACTCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTTACTGGTGACGATGTGCAGACACAGGTCATCATCAACCATCAAGCTCTTTCTTGTCTTCTGAATCTCTTGACTAATAATTATAAAAAAAGCATCAAGAAGGAAGCGTGCTGGACCATATCGAACATCACAGCTGGGAATAAACGGCAGATTCAGGATGTAATTGAGGCTAATATAATTGCTCCTTTAGTCCATTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACTTCGGGTGGATCTCATGAACAAATCAAGTTCCTGGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCCGATCCAAGGATTGTGACTGTTTGTTTGGAAGGGCTTGAAAACATCTTGAAGGTAGGAGAAGCTGAGAAAAATGTTAGCAATACTGATGGTGTGAATGTGTATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGATAACACTGAGATTTATGAAAAGGCAGTGAAAATTCTTGAGACATACTGGATGGAGGAAGATGATGAGACTATGCCTCCGGGGGATGCTTCTCAATCAGGGTTCAACTTTGGTGGTGGCACTCAACCTCCTGCGGTGCCTTCTGGTGGATTCAACTTTAATTAG 1779 0.4519 MHSDPGPLLSQFNKPSLLKLPNNKTPQTLLLLTFVLSNSIAISNPTLRFASVTQSNSNIMSYRPSANARTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQQMPASVHSTVIEKKLEHLPAMVTGVWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPSCRDLVLGQGALLPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIEAGVCNRLVELLLHSSPSVLIPALRTVGNIVTGDDVQTQVIINHQALSCLLNLLTNNYKKSIKKEACWTISNITAGNKRQIQDVIEANIIAPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKNVSNTDGVNVYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWMEEDDETMPPGDASQSGFNFGGGTQPPAVPSGGFNFN 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03609 592 MobiDBLite consensus disorder prediction 1 20 - -
Pumo5g03609 592 Pfam Atypical Arm repeat 517 563 IPR032413 -
Pumo5g03609 592 PIRSF Importin_alpha 64 591 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pumo5g03609 592 PANTHER IMPORTIN ALPHA 73 561 - -
Pumo5g03609 592 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 176 219 IPR000225 GO:0005515
Pumo5g03609 592 FunFam Importin subunit alpha 72 111 - -
Pumo5g03609 592 Pfam Armadillo/beta-catenin-like repeat 250 291 IPR000225 GO:0005515
Pumo5g03609 592 Pfam Armadillo/beta-catenin-like repeat 166 206 IPR000225 GO:0005515
Pumo5g03609 592 Pfam Armadillo/beta-catenin-like repeat 337 373 IPR000225 GO:0005515
Pumo5g03609 592 Pfam Armadillo/beta-catenin-like repeat 376 417 IPR000225 GO:0005515
Pumo5g03609 592 Pfam Armadillo/beta-catenin-like repeat 208 247 IPR000225 GO:0005515
Pumo5g03609 592 Pfam Armadillo/beta-catenin-like repeat 463 500 IPR000225 GO:0005515
Pumo5g03609 592 Pfam Armadillo/beta-catenin-like repeat 304 331 IPR000225 GO:0005515
Pumo5g03609 592 Pfam Armadillo/beta-catenin-like repeat 419 458 IPR000225 GO:0005515
Pumo5g03609 592 SMART arm_5 250 291 IPR000225 GO:0005515
Pumo5g03609 592 SMART arm_5 165 206 IPR000225 GO:0005515
Pumo5g03609 592 SMART arm_5 376 417 IPR000225 GO:0005515
Pumo5g03609 592 SMART arm_5 334 374 IPR000225 GO:0005515
Pumo5g03609 592 SMART arm_5 293 332 IPR000225 GO:0005515
Pumo5g03609 592 SMART arm_5 419 459 IPR000225 GO:0005515
Pumo5g03609 592 SMART arm_5 208 248 IPR000225 GO:0005515
Pumo5g03609 592 SMART arm_5 462 502 IPR000225 GO:0005515
Pumo5g03609 592 Pfam Importin beta binding domain 73 155 IPR002652 GO:0006606|GO:0061608
Pumo5g03609 592 SUPERFAMILY ARM repeat 74 560 IPR016024 -
Pumo5g03609 592 Gene3D - 133 556 IPR011989 -
Pumo5g03609 592 MobiDBLite consensus disorder prediction 100 122 - -
Pumo5g03609 592 Gene3D - 72 111 IPR036975 GO:0006606
Pumo5g03609 592 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 303 345 IPR000225 GO:0005515
Pumo5g03609 592 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 219 261 IPR000225 GO:0005515
Pumo5g03609 592 ProSiteProfiles IBB domain profile. 57 119 IPR002652 GO:0006606|GO:0061608
Pumo5g03609 592 FunFam Importin subunit alpha 133 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03609 Pumo-Chr5 85556865 85562288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03609 K15042 - gmx:100806288 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03609 5 85556865 85562288 Pumo3g02017 3 31384416 31389777 ECH
Pumo3g02017 3 31384416 31389777 Pumo5g03609 5 85556865 85562288 ECH
Pumo5g03609 5 85556865 85562288 Pumo5g03609 5 85556865 85562288 ECH
Pumo5g03609 5 85556865 85562288 Pumo3g02017 3 31384416 31389777 PCT