Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03600 ATGACCATCAAACAAATAAGTGGAATACCAGATTTGGTTGATTTTAAAAGATCAAGGAACACGGTACTTGAATATGTACAGGATATTCTTTGCAATGCAGAGTTTATGGCAGAAGAATTTGTCATGGGTCAAACTAGTACACTCATAATGCCAAATCTCTTTGATCTGTTGGAGAATCAGAATTATGGAACAGAGAACTATGGAGAAGAGTACTCTAAGCTTGAAAGGAAGGCTATATTTGACTTTGTGAGCGAGTTCCTAGAGTCGAGATGCAAGCAAGCTTTCGATGGAACGTGCAAAGCATGGCCTGGATGGGTGATGTCAGTTCATAGGGTCAGCTGGATGGCAGAGGAACTGTACAAGGAGTTGCTTGGTTTTAGAAGCATGGAAGAGTTAATGGTGGATGAGCTTGTCACTAAGGACATGAGCTCTGGATGTGGGAAATGGCTTGACTTTGATGTTGAAGCATTTGAAGAGGGTTTAGAGGTTGAGGGGGACATACTATCTTATTTGATTGATGAATTGGTTTCTGATTTGTTACCTGTCTAA 549 0.4062 MTIKQISGIPDLVDFKRSRNTVLEYVQDILCNAEFMAEEFVMGQTSTLIMPNLFDLLENQNYGTENYGEEYSKLERKAIFDFVSEFLESRCKQAFDGTCKAWPGWVMSVHRVSWMAEELYKELLGFRSMEELMVDELVTKDMSSGCGKWLDFDVEAFEEGLEVEGDILSYLIDELVSDLLPV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03600 182 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 6 178 - -
Pumo5g03600 182 Pfam Domain of unknown function (DUF4378) 23 174 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03600 Pumo-Chr5 85454864 85455412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03600 23 180 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 40.625 1.22e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03600 - - gmx:102663635 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03600 5 85454864 85455412 Pumo5g03600 5 85454864 85455412 ECH