Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03595 ATGATCCAATTTGCTCGTCGATACCAAGTTAGCATTGAAGTGGGAAGTGCATTCGGGTCTATTTTAAATGTCACTCTTTGCCAGACTCATTCTCATACTTCTACTTTCATTGTTCATGGACCCTTCACTCTAATTTCCCTCACTGGCACCTACATTAATAACAACCCTTTTGTTGCTTCTTCATCTTTATCATCATCATCATTCAATCTTAACCTTCATTGTTCTTTTAAGATTTCATTTTGTTCAAATTTAGGTCAAAGTTTTACTGGGATCGTTGGAGGGAAGGTTATTGCAGGTGATGACGTTACTGTGGTAGCTACCATTCTCAAAGAACTTTGA 339 0.3746 MIQFARRYQVSIEVGSAFGSILNVTLCQTHSHTSTFIVHGPFTLISLTGTYINNNPFVASSSLSSSSFNLNLHCSFKISFCSNLGQSFTGIVGGKVIAGDDVTVVATILKEL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03595 112 ProSiteProfiles PPC domain profile profile. 1 112 IPR005175 -
Pumo5g03595 112 Gene3D - 1 112 - -
Pumo5g03595 112 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 108 IPR014476 GO:0003680
Pumo5g03595 112 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 109 IPR005175 -
Pumo5g03595 112 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03595 Pumo-Chr5 85429744 85430082 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03595 3 106 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.962 2.38e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03595 - - gmx:100527104 145.976