Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03589 ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGCCTTGTGTGGAGGATGTAGTTAGAGTTGGGAACGCGAGCGTTGTTTCAGCTGCTGCTACTACTTCTGAAATGCGTCTAGGATCAGCGGCTAGTTGTTATCTCCAGCGAGAAGCTCCTCAACAGAATGTAACCGACTCGGATCGGATGATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGAATTACTCTCTGCGTATATAGAATGCCAAAAGGTTGGAGCACCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGGGATAGGGGAAGGTCCTGAACTTGACCAGTTCATGGAAACATTCTGCCAAGTTCTTCATAGATACAAGGAGGAGTTGTCGAGGCCGTTCAATGAAGCGACTTTGTTTTTGGGTAAAATGGAATTACAACTGAGCAACCTTTGTAATGGAACACTAACAAAGTCATCGGATAACAACCGCTCCGATGAGGTGGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATCATGTATCTTCTGTAACTTGCCCAGCTGATCAGAATGTTAAAGAGATGCTACTTCGCAAATACAGTGGTCATTTTAGTGGTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAGGGATGCAAGGATAGCACTCATGGACTGGTGGAACACCCATCATAGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAATTACTGGACTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCACTGGAAACCAGCCGAGGACATGAGATTTGCCGCTATGGATGGGTTAAGTGGCGGCGGCGGTGGCATTGGAGGACCTATGTTGTTTTAG 936 0.4573 MEAVYRLKPLLPCVEDVVRVGNASVVSAAATTSEMRLGSAASCYLQREAPQQNVTDSDRMIKIQIANHPLYPELLSAYIECQKVGAPPELACLLEEIGRESHRMNARRGIGEGPELDQFMETFCQVLHRYKEELSRPFNEATLFLGKMELQLSNLCNGTLTKSSDNNRSDEVASGASEEELSCGEMEAFEDHVSSVTCPADQNVKEMLLRKYSGHFSGLRKEFLKRRKKGKLPRDARIALMDWWNTHHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPAEDMRFAAMDGLSGGGGGIGGPMLF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03589 311 SMART ELK_2 203 224 IPR005539 GO:0003677
Pumo5g03589 311 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Pumo5g03589 311 Gene3D - 221 296 - -
Pumo5g03589 311 SUPERFAMILY Homeodomain-like 225 298 IPR009057 -
Pumo5g03589 311 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Pumo5g03589 311 SMART KNOX1_2 59 103 IPR005540 GO:0003677|GO:0005634
Pumo5g03589 311 Pfam KNOX1 domain 61 102 IPR005540 GO:0003677|GO:0005634
Pumo5g03589 311 Pfam ELK domain 205 224 IPR005539 GO:0003677
Pumo5g03589 311 Pfam KNOX2 domain 110 156 IPR005541 GO:0003677|GO:0005634
Pumo5g03589 311 CDD homeodomain 226 286 IPR001356 GO:0003677
Pumo5g03589 311 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Pumo5g03589 311 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Pumo5g03589 311 SMART KNOX2_2 106 157 IPR005541 GO:0003677|GO:0005634
Pumo5g03589 311 SMART HOX_1 225 290 IPR001356 GO:0003677
Pumo5g03589 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03589 Pumo-Chr5 85361718 85368855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03589 14 301 Homeobox Transcription Factor Family AT1G23380 51.701 1.35e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo5g03589 KNOX2 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03589 - - gmx:100814830 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03589 5 85361718 85368855 Pumo5g03589 5 85361718 85368855 ECH