Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03586 ATGGAGGAGTCTTTGCGCTCAAACGTGGATTCAGTTAATCACAAGAAGCGCCGCAAAATCACACACCTCACTCTCCTTCCCTGGACTTCCCAAACCGATCAGCGCCTCTACACCTCCAAGCTCCTCCAAGCGCTCCGCCGCAACAATCCTTTCGCCCGCCGCCAAGTCCGCGCCGCCGCCGACCGAGTCCTCGCCGCCACGGCCAAAGGCCGAACTCGCTGGAGCCGCGCAATTCTCGCAAATCCGTTCGGCCGGTGGAAGCTAGCTCAGCACAAGAAGGTGAAGAAGTACTCCGGCAACAAATTGGTGAAGAAGAGGACGCCGGAGATTCGGAGAAGGTTGCCGGCGGTGCAGAAGAAAGCGCGCGTTCTCGGACGGTTAATCCCCGGTTGCCGGAAGGTGTCGTTCCCGAAGCTTCTAGAAGAAGCCGGTGACTATATTTCGGCCCTGGAGATGCAAGTGCGAGCCATGAAGGCTCTCGCCGACCTTCTCGCCGCCGGTGCGCCGCCGCCCGCTCCGATCGCTTTCGGTTGA 534 0.603 MEESLRSNVDSVNHKKRRKITHLTLLPWTSQTDQRLYTSKLLQALRRNNPFARRQVRAAADRVLAATAKGRTRWSRAILANPFGRWKLAQHKKVKKYSGNKLVKKRTPEIRRRLPAVQKKARVLGRLIPGCRKVSFPKLLEEAGDYISALEMQVRAMKALADLLAAGAPPPAPIAFG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03586 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 170 IPR036638 GO:0046983
Pumo5g03586 177 CDD bHLH_AtIBH1_like 111 155 IPR044549 GO:0006355
Pumo5g03586 177 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 30 164 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03586 Pumo-Chr5 85305903 85306705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03586 18 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 50.641 2.62e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03586 - - gmx:100802046 214.927