Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03582 ATGGACGGCCAGAGGCTGTTGTCGATGTTCACTTCGTCTGTTTTGAAGAAGAGCGGAGATGACAAAGCCTCCGAAAGCATCGTCGACGGTGTTATTGCGGAGTTCGCGGCGGACGAGACCGATAGACTGAGGCGGAGAAAAGCTCGATCGAATTCCTCTTCCCTTACAAACGATGCTTTGCGGATTAACAACACGTTTAGGGATAAGTTTTCTGCTGATTTGATTGGAGTTTCTTCGTTGCCGGCAAATGGTAACGCTGAGAGTGATGGTTTTGACTCAGGGGTTGAGCAAAAGAGCGAGGTGGTTAGTGAAATTGAAGATTCTGAGAATGGACAGGCACCAATGGTGGAACCAGATGATTTTAAAATTAATGAGGGTATAGTTGAAGAGAAAGAGGTGAAGAATTTTGAAATTGAAGTAAAATCGGGTGCTAAAAAGGAGGTGGAGGAAGATGAATCGTTTCTTTTCTATATATTAGATGCATACGAGGAGTTTTTTGGAGAAAACAGGGGCACCCTTTATCTGTTTGGGAAGGTCAAAGTAGGGGATTTGTATCAGAGTTGCTGTGTTATTGTGAAGAACATGCAGAGGTGTGTCTATGCAGTTCCAAGCCGACCTCTGCATCGCACTGAAGAGATGATGAGTCTCGAGAGAGATGTCCAAGAGTCTCGAATTTCTTCTGCAGATTTCTTTAAAAAGCTGCAACTGCAATGCATAAATAAGTTTTGTGATGCTTTTGTGCCATGTAAATTTATTGATGTTCGATTCCTTGCTCATTTTTGCAGAGGAAAATACGCATTTGGACGATCTGAAATTCCTGCAGGTGAAAATTATGTGGTGAAAATCAAGTATTCATTCAAGGATCCAGTACTTCCAGTAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTGGTTGCAGTGCGCTTGAGCTTTTTCTGATTAAAAGAAAGATAAAGGGGCCCTCATGGCTACAGGTTTCAAAGTTTTCTACAAGCTCAGCTTCTCGAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAACACATAAGGAGTTCAGTTCCTTCAAAAATTACTGCTAAGATTCCTCCTGTGGTTGTTGCAGCAATAAACTTGAAAACCACCATAAATGAAAAACAGAACACAAATGAAATTGTATCGGCATCTGTTGTCTGTTGCAACATGGTTAAGATTGACACTCCTACGATGGCTTCAGAGTGGAGGAGACCTGGAAGGCTGACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCGATGGGGTTCAACAAGGAGGTTACAGACAGAAACTTAAAAGCTGGTTCAAATATTGTCTGTGCTGAAAGCAGTGAAAGAGCTTTGTTAAACCGCTTGATGTTAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTAGCAAGCAGCATGTGGTCTAAATTAGGCCGACTCAACCGTTCTACAATGCCTAAACTTGGAAGAAGAAGCAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCTTGCATTGCTGGCCGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTAGTAAAGGAGGTTAATTATTCTTTAACGCACCTTGCAAAATCGCATCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAACAGCAGAATCCCTAATGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTCATGTTTTATTTAAGTATTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAATGAAATATATGGTGCCAGACAAGTTCTCAAACCATGCAAAAGAAACAAAATTAACAAAACGCAAGGCAACTCATGATGTGGAGGATAGCAACTTTGATGTAGACATTGATGATGCAAAATACAACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGCCCTTCTTATGCCGGGGGGCTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAGTATATATTGCTTCTGGACTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTTGGACGGATCTTTTCCTCGTCTACCATCTAGTGAAACAACCGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTCGATCAGAGGAAAAAGGTAAAGTCGTTGATAAAGAATGAAAAAAAGAAGAATGAAAAAGCTGATCCTATTAGAGTTCAGCACCTGGATATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGGTGCCTGGGATTCTCCAATTCAAGATTTTATGCTAAGCCGTTAGCTGAGCTCATAACTTCACAAGGAAGGGAGATACTACAGAGTAATGTTGATCTTATTCAGAATAACTTGAATTTAGAGGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGAGGATGCTAATAAAATGGCTGCAAGAGTCATTCAAGTGGTCAATAAGAAGTATACGTGCTTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTGCTTCTTAAGAAAAAGAAGTATGGAGCTGTAAAGTTGTTGTTTAAAGATGGCACCCCATTTGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAACTAGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGTGAAGATGTCATGGAGTCAATCCACAACTCGCTAATGAAGGTACAAGAAGAAATGAGGAACGGACAGGTACCATTAGAGAAATATGTCATTATAAAGACATTAACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTCACTCTTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAGTTTGCTATGAGCAGGGTGGTAGTTTGGGCAGTGCAGCCGGCATTGCTCAACGTGCCAGACATCCTGATGAACTTAAACGAGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCTGTGGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCAGAAAGATTGGCTGATTGTTTAGGGCTTGACTCGTCAAAGTTTCATCATAAATCAAGTGAAGCTTTAAATGATGAATCTAGAAGCTCATTCTTGTCTGTCGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCCTTAAATCTATTTGTTTGTTGGCAAGTGAAAGGGCCACCAGCGTAGCCATGGAGGAATCTGACTACAACTTCTGGCGTAAGCTGTGCTGTCCTAAATGCCCAGAAGATGTTAAAATTTCTCCTGCAATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGAGGTTTGTTTTAATGTACTATAAAGGTTTACTAATGTGTGATGATGAAACGTGTAAGCATACAACACGAAGTATCAGCCTTCGGTTGATTGGTGATTCTGAGAGAGGAACTATTTGTCCAAATTACCCTCGCTGCAATGGGTGTCTAGTTAAAAAGTACACTGGGGCAGACTTATACAAGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTTTATAGAGAAGGTGGAGGCAAAATCTAGAATGCCGATAGAGAAAGAGTTGATCAAAATTAGGCCGATGATTGATCCGGCAGCATCAACAGCACAGAAGATCAGGGACCGTTGTGCCTTTGGGTGCGTGAAACTGGATGATCTGGTCATTACAATTTAA 4029 0.4152 MDGQRLLSMFTSSVLKKSGDDKASESIVDGVIAEFAADETDRLRRRKARSNSSSLTNDALRINNTFRDKFSADLIGVSSLPANGNAESDGFDSGVEQKSEVVSEIEDSENGQAPMVEPDDFKINEGIVEEKEVKNFEIEVKSGAKKEVEEDESFLFYILDAYEEFFGENRGTLYLFGKVKVGDLYQSCCVIVKNMQRCVYAVPSRPLHRTEEMMSLERDVQESRISSADFFKKLQLQCINKFCDAFVPCKFIDVRFLAHFCRGKYAFGRSEIPAGENYVVKIKYSFKDPVLPVDLKGESFCALLGTGCSALELFLIKRKIKGPSWLQVSKFSTSSASRRVSWCKFEVTVDSPKHIRSSVPSKITAKIPPVVVAAINLKTTINEKQNTNEIVSASVVCCNMVKIDTPTMASEWRRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNLKAGSNIVCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLGRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLVKEVNYSLTHLAKSHLNKFRKEVAPHEVPKMFQTAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMKYMVPDKFSNHAKETKLTKRKATHDVEDSNFDVDIDDAKYNNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSETTGVLPEVLKNLVDQRKKVKSLIKNEKKKNEKADPIRVQHLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSNVDLIQNNLNLEVIYGDTDSIMIYSGLDDIEDANKMAARVIQVVNKKYTCLEIDLDGLYKRMLLLKKKKYGAVKLLFKDGTPFEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVMESIHNSLMKVQEEMRNGQVPLEKYVIIKTLTKPPEAYPDAKNQPHVLVAQRLKQQGHSSGCSVGDTIPYIVCYEQGGSLGSAAGIAQRARHPDELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEALNDESRSSFLSVADDEERYRGCEPLVLSCPSCSGTFDCPPVLKSICLLASERATSVAMEESDYNFWRKLCCPKCPEDVKISPAMIANQVKRQAERFVLMYYKGLLMCDDETCKHTTRSISLRLIGDSERGTICPNYPRCNGCLVKKYTGADLYKQLSYFCHVFDTVSFIEKVEAKSRMPIEKELIKIRPMIDPAASTAQKIRDRCAFGCVKLDDLVITI 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03582 1342 CDD POLBc_alpha 702 1112 IPR045846 GO:0003887|GO:1902975
Pumo5g03582 1342 FunFam DNA polymerase 1135 1328 - -
Pumo5g03582 1342 CDD DNA_polB_alpha_exo 368 619 - -
Pumo5g03582 1342 Pfam DNA polymerase family B, exonuclease domain 186 561 IPR006133 -
Pumo5g03582 1342 Gene3D DNA Polymerase alpha, zinc finger 1136 1327 IPR038256 -
Pumo5g03582 1342 FunFam DNA polymerase 940 1126 - -
Pumo5g03582 1342 Coils Coil 773 793 - -
Pumo5g03582 1342 Gene3D Palm domain of DNA polymerase 708 919 IPR023211 -
Pumo5g03582 1342 Gene3D - 156 354 - -
Pumo5g03582 1342 Pfam DNA Polymerase alpha zinc finger 1136 1338 IPR015088 GO:0003887|GO:0006260
Pumo5g03582 1342 Pfam DNA polymerase family B 627 1096 IPR006134 GO:0000166|GO:0003677
Pumo5g03582 1342 Gene3D Helix hairpin bin 767 825 - -
Pumo5g03582 1342 PRINTS DNA-directed DNA-polymerase family B signature 809 821 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo5g03582 1342 PRINTS DNA-directed DNA-polymerase family B signature 726 739 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo5g03582 1342 PRINTS DNA-directed DNA-polymerase family B signature 862 870 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo5g03582 1342 Gene3D - 368 683 IPR036397 GO:0003676
Pumo5g03582 1342 Gene3D - 196 321 - -
Pumo5g03582 1342 FunFam DNA polymerase 767 823 - -
Pumo5g03582 1342 Gene3D - 940 1127 IPR042087 -
Pumo5g03582 1342 NCBIfam DNA polymerase (pol2) 129 1094 - -
Pumo5g03582 1342 ProSitePatterns DNA polymerase family B signature. 864 872 IPR017964 GO:0000166|GO:0003676
Pumo5g03582 1342 SMART polmehr3 368 876 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pumo5g03582 1342 FunFam DNA polymerase 368 682 - -
Pumo5g03582 1342 SUPERFAMILY DNA/RNA polymerases 700 1112 IPR043502 -
Pumo5g03582 1342 SUPERFAMILY Ribonuclease H-like 276 649 IPR012337 -
Pumo5g03582 1342 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 104 1340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03582 Pumo-Chr5 85234474 85247283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03582 5 1340 Core DNA Replication Machinery Family AT5G67100 58.027 0.0 1566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03582 K02320 - gmx:100798779 2268.04