Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03581 ATGTCGTCAGTTGGTGTGGCACCAACATCAGGCTTGAAAGAATCGAGTGGTGTTGATAGCTTGCCAGAGGAGATGAATGATATGAGAATTTGGGATGATAAAGAAATGGAAGCCACTGTTGTTGACGGTAATGAAACGGAGACCGGGCATATCATTGTTACTACCATTGGGGATAGAAATGGTCAATCGAAGCAGACTATAAGCTATATGGCAGAACGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAGACAAGAGGTATAAAAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCTCTTTGAAGCATTGCTTCTTTTCAACCACCGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTGAACCAACGGATGCCCCTGATATATGTAAAACTCTATACATACCAGATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAGTTAATCCACATACTCACCAGGTTAAATTATGCGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGGGGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACATTTGGTCAGTTGGTTGTGTATTGGCTGAGCTTATGCTTGGACAGCCTTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGAACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCTAACTATACGGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAAAACTCGCTTGCCAAATGGTCGTTTCCTTCCACCACCATTGTTCAATTTTAAATCTCGTGAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATGCGAGGAAGCAGTGCCCGTTTCTTGGCTTGTGA 1221 0.4193 MSSVGVAPTSGLKESSGVDSLPEEMNDMRIWDDKEMEATVVDGNETETGHIIVTTIGDRNGQSKQTISYMAERIVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPKTRLPNGRFLPPPLFNFKSRELKGVPVEILVKLIPEHARKQCPFLGL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03581 406 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 33 400 - -
Pumo5g03581 406 ProSitePatterns Protein kinases ATP-binding region signature. 75 99 IPR017441 GO:0005524
Pumo5g03581 406 FunFam Glycogen synthase kinase-3 beta 53 148 - -
Pumo5g03581 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Pumo5g03581 406 CDD STKc_GSK3 64 356 IPR039192 -
Pumo5g03581 406 MobiDBLite consensus disorder prediction 1 16 - -
Pumo5g03581 406 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03581 406 Pfam Protein kinase domain 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03581 406 SUPERFAMILY Protein kinase-like (PK-like) 68 373 IPR011009 -
Pumo5g03581 406 Gene3D Phosphorylase Kinase; domain 1 53 148 - -
Pumo5g03581 406 MobiDBLite consensus disorder prediction 1 24 - -
Pumo5g03581 406 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03581 406 Gene3D Transferase(Phosphotransferase) domain 1 149 398 - -
Pumo5g03581 406 FunFam Shaggy-related protein kinase kappa 149 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03581 Pumo-Chr5 85224906 85229242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03581 75 358 MAP Kinase Gene Family AT2G43790 36.301 1.01e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pumo5g03581 Pkinase 4.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03581 K00924 - gmx:100795659 796.578