Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03579 ATGGCTAGGTCCGCTAAATACGATTCAATTGAGGATATTTCTCTCATGAAGGATAACTGGATCATCAAAGCTAGAGTGGTGAGGCTTTGGTTGGTTCCAGAATCGAATCAAACAAGGGGAAATAACTATCGTTCTATGGACATTGTTTTAATGGACGAAAATGGATCAAGAATTCAAGCTTCTGTTCATAAGTCTCTCATTTATATATTTCAAAAGATTTTGGAGGAAGATGTTATCGGGATTATGATTGGCTACGGGTCTGAAAAGGAAAATCAGAATAATGGATTAAAGTCTAAAAGAAATTTTATTGTATTAGAAGTTGATGGGCAAAAGATAGATTGCACTTTGTTCGAACCATATGTGAATGAGTTAAATAAATTTTTGGCTGCTAGGAAGACTGAAAATGTTGTTGTTGTTGTCCAGCTTGCAAAAGCTAAGACTTTCCAAGGGAAAATTAATATGCAAAATGCAAAATATTGTACCCGGCTGATATTCAATCCTGATTGTAAAGAGGCTCATGATATGAGAAAAAGGTGTGGAAGCAACCAAACTCGATCTCAAAGCTTGACTCAGATAACTAATCATGAGCCAATCAACTGTGAGGCTGATTTTCTGTCATCTTCCCCTGTGAAAACCATTTTGGCATTAAAGGACTGTGAAAAGGAAATATCATATGTGGTGTTGGCTACGGTATTGACCTCATTGCATAATGATGATTGGTGGTACATGGCTTGCCACTGTAGTCGTGCTGTTGTTCCAGATTCAAATAAGTATTACTGTGACATGTGTGACAAGCATACAAGCAAGGCTTCTCCCAGGTATTCTATCAAGATTCGAGTTATGGATGACACTGATTCAACAACATTTGTTCTCTTTGATCGTGAAGTTACGATGTTGTTTAACAGATCATGTGTTGATATGCTTGATGATTTAGAAAAGGATTCTGAAACAAATGGTGAAGATGGTCTAGATGATGAATTCCTATCTCAATCTGGAGGAAAGGAACAAGTTTGTTCGTCAAATAATTCTGACCACTTTGTTGATTTGAAGAGTGATGCTTCCAAAGAACCAAATTATAAAGACAATGAAGTGGGGAAAAAGAAACCAAAACAGGTTGTCAAAGCCAAAACAGTATATTAA 1140 0.3649 MARSAKYDSIEDISLMKDNWIIKARVVRLWLVPESNQTRGNNYRSMDIVLMDENGSRIQASVHKSLIYIFQKILEEDVIGIMIGYGSEKENQNNGLKSKRNFIVLEVDGQKIDCTLFEPYVNELNKFLAARKTENVVVVVQLAKAKTFQGKINMQNAKYCTRLIFNPDCKEAHDMRKRCGSNQTRSQSLTQITNHEPINCEADFLSSSPVKTILALKDCEKEISYVVLATVLTSLHNDDWWYMACHCSRAVVPDSNKYYCDMCDKHTSKASPRYSIKIRVMDDTDSTTFVLFDREVTMLFNRSCVDMLDDLEKDSETNGEDGLDDEFLSQSGGKEQVCSSNNSDHFVDLKSDASKEPNYKDNEVGKKKPKQVVKAKTVY 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03579 379 CDD RPA1_DBD_B_like 77 179 - -
Pumo5g03579 379 PANTHER OS03G0429900 PROTEIN 9 302 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo5g03579 379 Pfam Replication factor-A C terminal domain 226 315 IPR013955 -
Pumo5g03579 379 MobiDBLite consensus disorder prediction 348 370 - -
Pumo5g03579 379 SUPERFAMILY Nucleic acid-binding proteins 77 182 IPR012340 -
Pumo5g03579 379 MobiDBLite consensus disorder prediction 315 379 - -
Pumo5g03579 379 Gene3D - 70 191 IPR012340 -
Pumo5g03579 379 SUPERFAMILY Nucleic acid-binding proteins 6 84 IPR012340 -
Pumo5g03579 379 SUPERFAMILY Nucleic acid-binding proteins 213 316 IPR012340 -
Pumo5g03579 379 Gene3D - 201 348 IPR012340 -
Pumo5g03579 379 MobiDBLite consensus disorder prediction 332 347 - -
Pumo5g03579 379 CDD RPA1_DBD_C 220 316 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03579 Pumo-Chr5 85213424 85216298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03579 77 292 Core DNA Replication Machinery Family AT2G06510 23.043 2.55e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03579 - - tpra:123888149 243.817