Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03574 ATGGATACCTTCTTGTTCACTTCTGAGTCAGTGAATGAGGGTCACCCTGACAAGCTTTGTGACCAGATTTCTGATGCAGTGCTTGATGCCTGCTTGGAGCAGGATCCAGAGAGCAAGGTTGCCTGTGAGACCTGCACCAAGACCAACTTGGTCATGGTGTTTGGAGAGATTACAACAAAGGCCAATGTAGACTATGAGAAGATTGTGCGCGACACGTGCCGTTCCATAGGCTTTGTGTCCAATGATGTTGGCCTTGATGCTGACAATTGCAAGGTCCTAGTCTACCTTGAACAGCAAAGCCCTGATATTGCTCAGGGAGTGCATGGTCATCTCACCAAGCAACCTGAGGAGATAGGTGCTGGTGATCAGGGCCACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTTATGCCTCTCAGCCATGTCCTTGCAACCAAGCTCGGTGCTCACCTCACCGAAGTTCGCAAGAATGGGACCTGCACATGGTTAAGACCTGATGGAAAAACCCAAGTCACAGTTGAGTATTACAATGACAATGGTGCAATGGTCCCGGTGCGTGTGCACACTGTCCTAATTTCCACTCAGCATGATGAAACTGTTACCAATGATGAGATTGCTGCTGATCTCAAAGAGCATGTTATTAAGCCTGTTATACCTGAGAAGTACTTGGATGAGAAGACCATTTTCCATCTCAATCCATCTGGCCGTTTTGTCATTGGTGGTCCTCATGGCGATGCCGGTCTCACAGGGCGCAAAATCATCATTGACACATATGGTGGTTGGGGAGCTCATGGTGGGGGTGCCTTCTCTGGGAAGGACCCTACCAAGGTAGACAGGAGTGGAGCCTATATTGCTAGACAGGCTGCAAAGAGCATTGTGGCCAGTGGTCTTGCTAGAAGGTCCCTTGTGCAAATTTCATATGCAATTGGTGTTCCTGACCCCTTATCAGTGTTTGTTGACACTTATGGGACTGGAAAGATTCCAGACAAGGAGATTCTCAAGATTGTGAAGGAAAATTTTGATTTCAGGCCTGGAATGATTTCCATTAATTTGGACCTCAAGAGGGGTGGGAATGGAAGGTTCTTGAAAACTGCTGCTTATGGTCACTTTGGAAGAGAGGACCCAGACTTCACCTGGGAGGTGGTGAAGCCTCTCAAGTGGGAGAAGCCCCAAGAGTAA 1182 0.4814 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRDTCRSIGFVSNDVGLDADNCKVLVYLEQQSPDIAQGVHGHLTKQPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAHLTEVRKNGTCTWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVASGLARRSLVQISYAIGVPDPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEKPQE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03574 393 Gene3D - 11 279 - -
Pumo5g03574 393 Gene3D - 117 381 - -
Pumo5g03574 393 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Pumo5g03574 393 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
Pumo5g03574 393 Gene3D - 4 242 - -
Pumo5g03574 393 FunFam S-adenosylmethionine synthase 134 241 - -
Pumo5g03574 393 CDD S-AdoMet_synt 5 384 - -
Pumo5g03574 393 FunFam S-adenosylmethionine synthase 262 381 - -
Pumo5g03574 393 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Pumo5g03574 393 SUPERFAMILY S-adenosylmethionine synthetase 240 389 IPR022636 GO:0004478|GO:0006556
Pumo5g03574 393 Hamap S-adenosylmethionine synthase [metK]. 2 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Pumo5g03574 393 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
Pumo5g03574 393 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 2 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Pumo5g03574 393 FunFam S-adenosylmethionine synthase 11 127 - -
Pumo5g03574 393 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Pumo5g03574 393 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Pumo5g03574 393 PIRSF MAT 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Pumo5g03574 393 NCBIfam methionine adenosyltransferase 5 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Pumo5g03574 393 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03574 Pumo-Chr5 85171983 85174455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03574 K00789 - pvy:116110364 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03574 5 85171983 85174455 Pumo3g02130 3 33012078 33014767 ECH
Pumo5g03574 5 85171983 85174455 Pumo5g03574 5 85171983 85174455 ECH