Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03566 ATGGAAGGCAGGAAACTGGTGGCCAGTGACAGAAGGCAATCTAAAAGGGAACAGGCATATCAGGACTCTCTTATTGAGGATTTGTCAGAGGATTTTCGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGATAACGTAGAGCAAGCATCTTTGGACACACAGTTAACATCATCTAATATTGGCTTTAAGCTCCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGGTTGGTAAGCAAGAAGAAGATGATTTCTTTACCGCAGAAGAAAATATCCAGCGAAAAAAACTCGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTCTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGTAGTAGTCGGGACGATAGGCAAAAGAGAGAACAGCAGCGTCAAGAGAGAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAACAAGAGTCTGGATCAGCAACAGTTCCCTCTGAATCTAGAACTGCTACTGCACTTACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGTTTTTCTTCTAAAGGCAGTGCTTCCAAGATTACATTTGGTGCCAAGAAGCAAAGTGTTGCAAAGAAGCAAAATGTTCCGATTTCCTCTATATTTAGCAATGATAGTGATGAAGAATAA 897 0.4147 MEGRKLVASDRRQSKREQAYQDSLIEDLSEDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQQESGSATVPSESRTATALTDQEQRNTLKFGFSSKGSASKITFGAKKQSVAKKQNVPISSIFSNDSDEE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03566 298 MobiDBLite consensus disorder prediction 221 292 - -
Pumo5g03566 298 SUPERFAMILY beta-beta-alpha zinc fingers 143 183 IPR036236 -
Pumo5g03566 298 MobiDBLite consensus disorder prediction 186 216 - -
Pumo5g03566 298 MobiDBLite consensus disorder prediction 1 20 - -
Pumo5g03566 298 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 9 298 - -
Pumo5g03566 298 MobiDBLite consensus disorder prediction 186 298 - -
Pumo5g03566 298 ProSiteProfiles G-patch domain profile. 60 105 IPR000467 GO:0003676
Pumo5g03566 298 SMART G-patch_5 58 103 IPR000467 GO:0003676
Pumo5g03566 298 Pfam G-patch domain 61 101 IPR000467 GO:0003676
Pumo5g03566 298 Pfam Zinc-finger double-stranded RNA-binding 155 182 IPR022755 -
Pumo5g03566 298 ProSitePatterns Zinc finger C2H2 type domain signature. 157 179 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03566 Pumo-Chr5 85095237 85098527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03566 10 298 C2H2 Transcription Factor Family AT5G26610 65.753 2.54e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03566 - - gmx:100785068 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03566 5 85095237 85098527 Pumo5g03566 5 85095237 85098527 ECH