Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03563 ATGCCTCTGCATGAGTTATACCGTGTGGCTAAAGGGAAACTGGATCCTATAGAGATGAACAACGACAAATGTGCAGTTGATCAATCTTCTGTACCCAATAATGATTTGTTTGAGCTGGTTTGGGAAAAGGGCCAGATTTCAGTGCAGGGTCAGTCCAGTAGAGCTAGAGTGAGCCCAAATTGTAAAACTTTGCCATCTCACTACTCCTTACCATCTCACAGTCCAGTAGGATATGCTAATAATAATAATGCTACCATCACAAGGATGGGGAAGTGTGGGAATTTAGGTGCTGAATTGAATGAAATTAGAAGGCTGATTCCTTCAGGTGAATTGGATTTGAGTGAAGAAGAGGAAGACATGGTGATGCCTTGGTTCAAATATGGAATCGATGATTCTTTGCAACATGGATATAGTTCTTATTTTTTCCATGAGCCATCATCTGGGGTCACCATGAATGAGCTTTCACTTTCAGCATCAAATAATTTTTCTTTGCTAGATAGAAGAAATAATTGTAGTAAGATAATTAGGGACACTCATAAACACTCTTCATTTGCATCTGTTAGATTCAGGGTAGCAGATATAGCTGAAAATAATGCAAATAATGTTCCATCTGGCTCAAGTGGTTTTTCTAGCTTAAAGATGGAGAAGCAAGGTCTAGTTATATGTAGCAATAGTTCCACCATGATGAATTTTTCCCATTTTGCAAAACCTGCTGCTATTGTCAAAGCTAACCTTGAGAACATTGGCCTGGCATCAAGATCAGCAAGTGTGGGAATAAAGTTAAAAGGTGCTGCTGCAACTGTAATCAATCCTGTTGAATCAACGAAAGTTGAATTAAATGGAGAGTGTCCAAAGAAACCAGCCACAGACAATCAAGATCAGGATGGTGCTGTTTCTACAAAGTGTGACCCTTCTTGCAAAGATGTGTCCAAGATTGATCAAAATCAAACTTCAAGTCTAGTTGTTGGTGAAAGTGTGAATAAAGGACAGGAAGCTGTTCAAAAAGTTGTGGAGCCAGCTGTGGTCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGAGAGGGGTTTGGAGGATCCAAATCAAAATTTGAAGCTTAAAAGTACAGACACTGAGGACTTTGAGAGCCAAAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTCAAAAAGGAAGTTCCTGCACAACGAATTGGAGGCAAGAGAAGCCGTTCAGCCGAAGTGCATAATTTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCGTTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCAATGTTGGATGAGGCGATAGAGTATCTCAAAACACTTCAACTCCAACTTCAAATTATGTCAATGGGAACTGGTTTATATATGCCTCCAATGATGTTACCTCCGGGAATGCAGCACATGCATGCACCACACATGGGTCCTTTTTCACCTATAGGTGTTGGCATGCAAATGAGGTTAGGAATAGGTTGTGGAATGGGCATGCCTGATGCGAATGATGAGTCTTCTAGATTTATTCAAGTGCCCCAAATGCAAGGAACTCAACTTCCCATTGCACATACATCTGGATCCACTGTTTTACATGGGATGACAAGACCAAATGCTCAAGTGTTTGGGCATCATCCTAGTCAGGGTCACCCCATGCCAATGCCACATGCTCCCATCTTTTCTTTTCCAACAGAACCTTTTATGAACCCATCAACTTTAGGACTTGTGGAAACTGTGGATAAGGCTTCAGCCTCTGGCTCAAAGCATCAGATTCCACATGTGAACCCACAACTTGTACAACAAAACACCAACGGTTGTAATTCAACAAATCAGATGTCAACACAGTGTGAAGCAACAATTGGTGGATTTGATTCTGAACACTCAACTTTGGTACTTAATAGTGGTCATGCTACTTCGGCAAATGACAGAGGAGCTATTAATCCCCAGTAA 1968 0.4121 MPLHELYRVAKGKLDPIEMNNDKCAVDQSSVPNNDLFELVWEKGQISVQGQSSRARVSPNCKTLPSHYSLPSHSPVGYANNNNATITRMGKCGNLGAELNEIRRLIPSGELDLSEEEEDMVMPWFKYGIDDSLQHGYSSYFFHEPSSGVTMNELSLSASNNFSLLDRRNNCSKIIRDTHKHSSFASVRFRVADIAENNANNVPSGSSGFSSLKMEKQGLVICSNSSTMMNFSHFAKPAAIVKANLENIGLASRSASVGIKLKGAAATVINPVESTKVELNGECPKKPATDNQDQDGAVSTKCDPSCKDVSKIDQNQTSSLVVGESVNKGQEAVQKVVEPAVVSSSVCSGNGAERGLEDPNQNLKLKSTDTEDFESQSEDVEEESVGVKKEVPAQRIGGKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGTGLYMPPMMLPPGMQHMHAPHMGPFSPIGVGMQMRLGIGCGMGMPDANDESSRFIQVPQMQGTQLPIAHTSGSTVLHGMTRPNAQVFGHHPSQGHPMPMPHAPIFSFPTEPFMNPSTLGLVETVDKASASGSKHQIPHVNPQLVQQNTNGCNSTNQMSTQCEATIGGFDSEHSTLVLNSGHATSANDRGAINPQ 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03563 655 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 464 IPR036638 GO:0046983
Pumo5g03563 655 MobiDBLite consensus disorder prediction 348 386 - -
Pumo5g03563 655 FunFam Basic helix-loop-helix transcription factor 397 460 - -
Pumo5g03563 655 PANTHER TRANSCRIPTION FACTOR PIF3 1 619 IPR044273 GO:0003700|GO:0006355
Pumo5g03563 655 Pfam Helix-loop-helix DNA-binding domain 406 452 IPR011598 GO:0046983
Pumo5g03563 655 CDD bHLH_AtPIF_like 402 464 IPR047265 -
Pumo5g03563 655 Gene3D - 398 459 IPR036638 GO:0046983
Pumo5g03563 655 MobiDBLite consensus disorder prediction 283 308 - -
Pumo5g03563 655 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 402 451 IPR011598 GO:0046983
Pumo5g03563 655 SMART finulus 408 457 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03563 Pumo-Chr5 85027112 85031778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03563 1 539 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.230 1.49e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g03563 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03563 K12126 - gmx:102659557 997.267