Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03562 ATGGGGAGACACTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCGGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCCGTTCCAAAACTAGCTGGTCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGGTGGATAAATTACCTTAGGCCAGATTTGAAGAGAGGAGCATTCTCACAGCAAGAAGAGAACTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCACAGATTGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTCAAGAAGAAGCTTAGGCAAAGAGGCATTGATCCAAACACACACCAGCCCCTCTCTGAGGTTGAGAATGACAAGGACAAGCCACTCACAGCTGAGAAAAGCAACCAAAAAGCCTCCAATGAGGTGAGTCTTGTTGAGCCACCAAAACCAAAGCCAATAACTACTACTACAAATACTGCTTCTATGCCTATGGATAGATATCCCCTTGAAGTTTCTTCCACCTCCAAGATCAGCAGTGGCAACAACAGCACCCTAGACAGGTTTGACAGCTCCATCACTAGTTCTGATATGATGGGAATGGGAGGATATTTCCCTTTCCAGCACCTGAACTATGGACCAAACATGGGACTCACTACTCCCAACAACACCCCACTTTGCTTCATGCCAAGTTCCACTTCTTCACAAATGATGTCAGAGCTGAATTCCTCCATGCTCCATTCTATGTTCCCAACACATGTAAAGCCCACTGTTAGCCTCCAGTCTAACAACAACAACAACAACAACAACAACAACCCTTCTTCCATATCCTCTGATGGGGTTCAGAACTGGGAAGCAAGTACCTTCAGTAATAACAACAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCACTAACTTCCTTGATCATAACAGCACAATAACATGGGGGCTGCAGGCAGCAGAATCTGCCACCAAGGCAGATAAAGATGCTCATTCTTCTCATGTTGTTGTACCCTTGCAATCAGAACAAGAAGACATTAAATGGTCTGAATATCTCAACAACACCCCTTTCTTTCTGGGAACCACAGTGCAGCATCAAACCACAAACTCTCTCTACAGTGATGAGGTTAAGCCAGAATCAGGGTTCATAGCAGACGAATCAAGTACCAGTTGGCACCACAGCCAGCATTTTCAACCTTCGGATATATATACCAAAGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTGTAG 1317 0.4495 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENDKDKPLTAEKSNQKASNEVSLVEPPKPKPITTTTNTASMPMDRYPLEVSSTSKISSGNNSTLDRFDSSITSSDMMGMGGYFPFQHLNYGPNMGLTTPNNTPLCFMPSSTSSQMMSELNSSMLHSMFPTHVKPTVSLQSNNNNNNNNNNPSSISSDGVQNWEASTFSNNNNNNASKSNGSSSCSIQLQSSTNFLDHNSTITWGLQAAESATKADKDAHSSHVVVPLQSEQEDIKWSEYLNNTPFFLGTTVQHQTTNSLYSDEVKPESGFIADESSTSWHHSQHFQPSDIYTKDLQRFSVAFGQTL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03562 438 Gene3D - 68 151 - -
Pumo5g03562 438 Gene3D - 11 67 - -
Pumo5g03562 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo5g03562 438 SMART sant 66 114 IPR001005 -
Pumo5g03562 438 SMART sant 13 63 IPR001005 -
Pumo5g03562 438 FunFam MYB transcription factor 68 140 - -
Pumo5g03562 438 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo5g03562 438 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g03562 438 MobiDBLite consensus disorder prediction 129 143 - -
Pumo5g03562 438 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g03562 438 MobiDBLite consensus disorder prediction 266 315 - -
Pumo5g03562 438 CDD SANT 17 61 IPR001005 -
Pumo5g03562 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo5g03562 438 FunFam Myb transcription factor 11 67 - -
Pumo5g03562 438 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo5g03562 438 MobiDBLite consensus disorder prediction 119 174 - -
Pumo5g03562 438 CDD SANT 69 109 IPR001005 -
Pumo5g03562 438 PANTHER MYB DOMAIN PROTEIN 55 1 330 - -
Pumo5g03562 438 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03562 Pumo-Chr5 85015089 85017441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03562 1 438 MYB Transcription Factor Family AT1G09540 45.638 4.50e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g03562 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03562 K09422 - gmx:100788976 740.339